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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_005646 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | C2H2 | ||||||||
Protein Properties | Length: 149aa MW: 16698.1 Da PI: 10.5031 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.6 | 0.0002 | 111 | 133 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k++ s+Lk H + + DCAR_005646 111 FSCTRCHKRYAVLSDLKAHSKIC 133 89*****************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.36E-5 | 98 | 143 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.5E-5 | 99 | 132 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MAASASASWK SGVRESADSS TSAFIRRRSY CRCCFYEKEP KSSRKSKTCN STEEGTICPG 60 SSRKRQIRRC RRRCTSAPKS VVRAHHDPAR ALGDLTGIKK HFSRKHGEKK FSCTRCHKRY 120 AVLSDLKAHS KICGTTEYKC ECGTTFYV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 2e-12 | 107 | 146 | 3 | 42 | Zinc finger protein JACKDAW |
5b3h_F | 2e-12 | 107 | 146 | 3 | 42 | Zinc finger protein JACKDAW |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017233294.1 | 2e-35 | PREDICTED: protein indeterminate-domain 9-like | ||||
TrEMBL | A0A161XFL2 | 1e-101 | A0A161XFL2_DAUCS; Uncharacterized protein | ||||
STRING | Aquca_003_00800.1 | 4e-29 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G45260.1 | 3e-32 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_005646 |