PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_005396
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 592aa    MW: 65954.3 Da    PI: 6.2199
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_005396genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.79e-13429475455
                  HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                  +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  DCAR_005396 429 NHVEAERKRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYITELQ 475
                  799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.6E-5146234IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.85425474IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.05E-17428484IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.18E-14428479No hitNo description
PfamPF000102.8E-10429475IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-17429483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.6E-17431480IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    Send to blast
MGESMWTEED KDMAVAVLGN CAFDYLISSS VSTDCSFMAV GNDENLQNKL SDLVECPDLS  60
SFCWNYAIFW QVLRDKSGEV VLGWGDGSCR ELREGEESEV DGILNLRCED ESLQRMRKRV  120
HQKLHSLFGG SDDECHSIGL DRVTDIEMFF LASMYFSFPH GEGAPGKCFR SRKHVWISDA  180
LKSPSDYCFR SFLAKNAGIQ TLVLIPTDVG VVELGSVRTI PENIELVQSI ISAFSSSPSV  240
CKSNIPTVAP LMREKGDGKT QFLDGGVVER PRITKIFGQD INSNRSELRP KLAVRKPDER  300
PWDVYANGMK PQFMTTRNDN HGLHGTQFTN GKQGNTVEIY SHPQTPTSNI FKRGAHEEFG  360
FKKFKTQIPA QVNIDFSGDK TRPSQPVIIE SEYSDVDAAY KEEQAALADD KRPRKRGRKP  420
ANGREEPLNH VEAERKRREK LNQRFYALRA VVPNISKMDK ASLLGDAIAY ITELQKKVKD  480
LESIGSTSRD ASSSDANPNG IPTPEFHNQV SNIEIQAADD IVNVRVTCPL ESHPASRVIE  540
AFREAKVSVV ESKLAAAKDT VFHTFVLKTE GTEQLTKEKL LAAFSREANS L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-28423483262Transcription factor MYC2
5gnj_B5e-28423483262Transcription factor MYC2
5gnj_E5e-28423483262Transcription factor MYC2
5gnj_F5e-28423483262Transcription factor MYC2
5gnj_G5e-28423483262Transcription factor MYC2
5gnj_I5e-28423483262Transcription factor MYC2
5gnj_M5e-28423483262Transcription factor MYC2
5gnj_N5e-28423483262Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1410418KRPRKRGRK
2433438ERKRRE
3434439RKRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017236861.10.0PREDICTED: transcription factor bHLH13-like
RefseqXP_017236862.10.0PREDICTED: transcription factor bHLH13-like
SwissprotA0A3Q7ELQ20.0MTB1_SOLLC; Transcription factor MTB1
TrEMBLA0A166D0760.0A0A166D076_DAUCS; Uncharacterized protein
STRINGXP_009781532.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35852348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.31e-159bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]