PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_005319
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family Dof
Protein Properties Length: 327aa    MW: 35813.4 Da    PI: 9.7863
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_005319genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof118.91.9e-3772131362
       zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                  e+ l+cprCdst+tkfCy+nnysl+qPr+fCk+CrryWt+GGalr vPvGgg+r+nk+s+
  DCAR_005319  72 EAGLNCPRCDSTQTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRSR 131
                  66789****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-3455124IPR003851Zinc finger, Dof-type
PfamPF027012.2E-3174129IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.09675129IPR003851Zinc finger, Dof-type
PROSITE patternPS01361077113IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MAFSSSVPAY NLDHHTNWHH QLQPQHQQAP NSHQQQLVQN PNLAPPPQAD QGSIRPGSMV  60
DRARIAKLPL PEAGLNCPRC DSTQTKFCYF NNYSLTQPRH FCKTCRRYWT RGGALRSVPV  120
GGGCRRNKRS RSRTSKSPNL VNTINQKGPS SSVNISTESP SRSADQVVVS HNNPFSSQVP  180
LMAALQNLNS HYGAVAGSTY EGFQMGNGSF GQSDTGFQLG HHNILTSRGQ GWRLPILAGS  240
EQASGHTNVF SYSQGERFEA ASAGQVKVEE PRRVLNLSRQ FLDVSDEKNT NTTNDSNQYW  300
GTSGGNSWTP DFTSHINNTS SASPFL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127132KRSRSR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00407DAPTransfer from AT3G55370Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017232956.10.0PREDICTED: dof zinc finger protein DOF3.6-like
TrEMBLA0A166CY250.0A0A166CY25_DAUCS; Uncharacterized protein
STRINGAquca_003_00022.17e-69(Aquilegia coerulea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8824419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.11e-48OBF-binding protein 3