PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

MYB_related

Protein Properties

Length: 217aa MW: 24806.6 Da PI: 4.5719

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_005305	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.3	1.3e-16	8	70	1	48
TSSS-HHHHHHHHHHHHHTTTT................-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg................tWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed +lv +v+++G + W++Iar+++ gRt++++k++w++y+ DCAR_005305 8 KGPWTEHEDVQLVFYVNLFGDRrwdfiakvsglkvagdKWSRIARKLP-GRTDNEIKNYWRTYM 70 79********************************************.***********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.497	3	74	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.8E-7	3	36	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.76E-14	6	66	IPR009057	Homeodomain-like
SMART	SM00717	1.4E-13	7	72	IPR001005	SANT/Myb domain
Pfam	PF00249	1.8E-5	8	37	IPR001005	SANT/Myb domain
CDD	cd00167	1.19E-9	10	70	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.7E-11	43	73	IPR009057	Homeodomain-like
Pfam	PF00249	4.5E-8	44	69	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MVQEEIRKGP WTEHEDVQLV FYVNLFGDRR WDFIAKVSGL KVAGDKWSRI ARKLPGRTDN 60 EIKNYWRTYM RKESQEKKRS MSPSPSHSNC SSSISSASPS LAADSQPIID TRERNFYDSR 120 GLDIYAANEN KSSKIHDCDG EEGYSMDEIW NDIELSPEES IKPVYGGYNE EILASPIWDY 180 CPDSLWMIDE EDSKMILPMS DPFQSLFVQG STHITG*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salicylic acid (SA). {ECO:0000269\|PubMed:16463103}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017231479.1	1e-149	PREDICTED: transcription factor MYB59-like
Swissprot	Q9LX82	1e-42	MYB48_ARATH; Transcription factor MYB48
TrEMBL	A0A166CXK9	1e-159	A0A166CXK9_DAUCS; Uncharacterized protein
STRING	VIT_06s0004g04140.t01	2e-70	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59780.3	9e-42	myb domain protein 59

Link Out ? help Back to Top
Phytozome	DCAR_005305

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nishida S,Kakei Y,Shimada Y,Fujiwara T Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana. Plant J., 2017. 91(4): p. 741-753 [PMID:28586097] Imran QM, et al. Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes. Sci Rep, 2018. 8(1): p. 771 [PMID:29335449]