PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_005083
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family WRKY
Protein Properties Length: 306aa    MW: 34263.9 Da    PI: 7.4116
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_005083genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.82.3e-33152209259
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  +Dgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+vers +dp++v++tYeg+Hnh+
  DCAR_005083 152 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCTVKKRVERSFQDPSTVITTYEGTHNHH 209
                  8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.6E-35136211IPR003657WRKY domain
SuperFamilySSF1182901.57E-29143211IPR003657WRKY domain
PROSITE profilePS5081131.95146211IPR003657WRKY domain
SMARTSM007742.3E-38151210IPR003657WRKY domain
PfamPF031061.1E-25152209IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MSDQPRDLVY YHDPFHDQQR FFSPNSSTNM AADPSSYMSF TDCVHGSSDY GSLASAFDLS  60
PFQQPLSTDQ KPKLESADPP VTPNSSVVLS SSTEAGDDEA NNSKKSDKQA KGAEEDVGES  120
SKKVSKAKKK GEKKEKEPRF AFMTKSEIDH LEDGYRWRKY GQKAVKNSPY PRSYYRCTTQ  180
KCTVKKRVER SFQDPSTVIT TYEGTHNHHL PSTLRGNVAG MFQHSMLNPG HMAGPGFPNQ  240
DFLVQMPPMN HIYNYGSGSN APNSSIFQQL QQQQNNLNLN QHQQLQLSDY GLLQDIVPSI  300
IKNHE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-29141212778Probable WRKY transcription factor 4
2lex_A1e-29141212778Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00168DAPTransfer from AT1G29860Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9146532e-72JQ914653.1 Hevea brasiliensis WRKY super family protein (WRKY9) mRNA, complete cds.
GenBankKT8275952e-72KT827595.1 Manihot esculenta WRKY transcription factor 20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017232812.10.0PREDICTED: probable WRKY transcription factor 71
SwissprotQ93WV43e-64WRK71_ARATH; WRKY transcription factor 71
TrEMBLA0A161WZV30.0A0A161WZV3_DAUCS; Uncharacterized protein
STRINGVIT_10s0003g02810.t011e-101(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14852475
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.12e-58WRKY DNA-binding protein 71
Publications ? help Back to Top
  1. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]
  2. Yu Y, et al.
    WRKY71 accelerates flowering via the direct activation of FLOWERING LOCUS T and LEAFY in Arabidopsis thaliana.
    Plant J., 2016. 85(1): p. 96-106
    [PMID:26643131]
  3. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  4. Yu Y, et al.
    WRKY71 Acts Antagonistically Against Salt-Delayed Flowering in Arabidopsis thaliana.
    Plant Cell Physiol., 2018. 59(2): p. 414-422
    [PMID:29272465]