PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

DCAR_005003

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

HD-ZIP

Protein Properties

Length: 294aa MW: 32588.4 Da PI: 7.2526

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_005003	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.5	2.7e-19	140	194	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++ +q+ +Le+ F++++++s+++++ LAk+lgL+ rqV vWFqNrRa+ k DCAR_005003 140 RKKLRLSIDQTAILEASFREHNTLSHNQKTALAKRLGLKHRQVEVWFQNRRARTK 194 67788999*********************************************98 PP
2	HD-ZIP_I/II	110.7	9.9e-36	140	227	1	88
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 +kk+rls +q ++LE sF+e+++L++++K++la++Lgl+ rqv+vWFqnrRARtk+kq+E dye+Lk+ + al+een++L+kev+eLr DCAR_005003 140 RKKLRLSIDQTAILEASFREHNTLSHNQKTALAKRLGLKHRQVEVWFQNRRARTKLKQTEIDYEFLKTYFRALTEENAKLKKEVQELR 227 69*************************************************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04618	1.5E-13	1	115	IPR006712	HD-ZIP protein, N-terminal
PROSITE profile	PS50071	17.086	136	196	IPR001356	Homeobox domain
SMART	SM00389	7.1E-15	138	200	IPR001356	Homeobox domain
SuperFamily	SSF46689	9.84E-18	138	205	IPR009057	Homeodomain-like
Pfam	PF00046	1.5E-16	140	194	IPR001356	Homeobox domain
CDD	cd00086	6.74E-15	140	197	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.3E-17	140	194	IPR009057	Homeodomain-like
PRINTS	PR00031	2.0E-5	167	176	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	171	194	IPR017970	Homeobox, conserved site
PRINTS	PR00031	2.0E-5	176	192	IPR000047	Helix-turn-helix motif
Pfam	PF02183	4.3E-8	196	227	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	5.2E-16	196	239	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MVQQRDELGL SLSLSFPGSF NHNHKLTNNN NQTAHVSSPL ELNDLVPSAT PNLVPENNTQ 60 KSHSGPKMET CREDRRYSLT GIDLNGLPTA DMGDEADRVL SPNSTPSSLC GNKRSLIREG 120 ANGENVTEFS IDQEDGDNSR KKLRLSIDQT AILEASFREH NTLSHNQKTA LAKRLGLKHR 180 QVEVWFQNRR ARTKLKQTEI DYEFLKTYFR ALTEENAKLK KEVQELRTFK LSPQVSIPPT 240 TLTICPSCEH LSEPSSAPTF SVCPSSTRSE TPQVHAMSTT TIASISTCAP NVD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	138	144	SRKKLRL
2	188	196	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017234562.1	0.0	PREDICTED: homeobox-leucine zipper protein HAT4-like
Swissprot	P46600	4e-60	HAT1_ARATH; Homeobox-leucine zipper protein HAT1
TrEMBL	A0A166CPE4	0.0	A0A166CPE4_DAUCS; Uncharacterized protein
STRING	cassava4.1_013034m	9e-74	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16780.1	1e-58	homeobox protein 2

Link Out ? help Back to Top
Phytozome	DCAR_005003

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zou LJ, et al. Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus. Plant Cell Physiol., 2016. 57(9): p. 1879-89 [PMID:27328697] Lozano-Sotomayor P, et al. Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana. Plant J., 2016. 88(3): p. 437-451 [PMID:27402171] Tan W, et al. Transcription factor HAT1 is a substrate of SnRK2.3 kinase and negatively regulates ABA synthesis and signaling in Arabidopsis responding to drought. PLoS Genet., 2018. 14(4): p. e1007336 [PMID:29659577]