PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_004782
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bZIP
Protein Properties Length: 138aa    MW: 15665.7 Da    PI: 6.0992
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_004782genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.58.9e-112564645
                 HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1  6 rerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45
                    rk++NRe+ArrsR RK++ ++ L    ++L + N +L
  DCAR_004782 25 QLQRKMSNRESARRSRVRKQKHLDDLMAQLAQLRKANNQL 64
                 5679*********************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.2E-61684IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.1742285IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1705.4E-102298No hitNo description
PfamPF001701.2E-72465IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.29E-92575No hitNo description
PROSITE patternPS0003602842IPR004827Basic-leucine zipper domain
CDDcd147021.70E-122875No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MAFSSGITTS SGSLHNTDLY QQQQQLQRKM SNRESARRSR VRKQKHLDDL MAQLAQLRKA  60
NNQLVMMMNV TAQRLLHVEA ENSVLRAQMA QLDARLDSLN EIIGFLDAEK EGFALDEEFC  120
YNAVNDSADL FHELYVC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13642RRSRVRK
23643RRSRVRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017214785.12e-96PREDICTED: ocs element-binding factor 1-like
SwissprotC0Z2L53e-29BZP44_ARATH; bZIP transcription factor 44
TrEMBLA0A166JG434e-95A0A166JG43_DAUCS; Uncharacterized protein
STRINGXP_008236935.18e-34(Prunus mume)
STRINGXP_004289640.18e-34(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53724123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.12e-31basic leucine-zipper 44
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]