PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_004632
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 628aa    MW: 70380.1 Da    PI: 6.3425
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_004632genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.93.7e-08429475455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h   Err R+++ ++f+ L +++P+a     +K++ ++ L  +++Y+k+L+
  DCAR_004632 429 NHVLEERRKREKMQEKFAILGSIVPSA-----GKVDNVTLLDDTIDYLKNLE 475
                  68889**********************.....9****************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.5E-545186IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088813.37425474IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-13428488IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-14428487IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.78E-7428479No hitNo description
PfamPF000103.3E-6429475IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.7E-8431480IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 628 aa     Download sequence    Send to blast
MAGRLRNQLA LAVKNKQWSY AIFWSSSAEQ NGALAWDDGY YNGDIKTRKT VQSEQLDADQ  60
LGLQRTEQLR ELYESLLDAE TNPQSARPTA ALSPEDLTDT EWYFLVCMSF VFNIGEGLPG  120
RSLAKNQTIW LCNARYADSK VFSRALLAKS ASIQTVVCFP YSGGVIELGT TDLVSEDLSV  180
IQHMTSFLET PGTVVSNNSA YVPKTARSGS NNIRAQPNEK NSKANMNPDT KWQKPNTCSP  240
NSSSEDFEPN CQARESLTAK HEGASRVQSW QLMDDEISNG VLNSEDSSDC VSQTFASPEK  300
SVPLQHENEM KENHLLDHED SKDMELTSVE VLNDDIHYQG IVSTLLKTSH QLIMGPCFKS  360
SIKDTCFVRW KKGRLSGSHK STGGTSQRLL KRVIYDVPIM HSNHLLEMQE NNDKGGKARR  420
LEADEIDENH VLEERRKREK MQEKFAILGS IVPSAGKVDN VTLLDDTIDY LKNLEKKVEK  480
LESQKELQDI EAARRKRSCD IIESTSDNYG DKRVDKSLKQ ALKKRKASGI KEVKAIRPFQ  540
QEDILTEDVT ISKTGKDITI EILCPWREDL FVEIMGATSN LHLDFHSVQS SNIDGNLSMT  600
IKSKVNRSTP STKIIRQALQ KVTRNCG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5t0f_A7e-17617612180Transcription factor MYC3
5t0q_A7e-17617612180Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1434439RRKREK
2511524KRVDKSLKQALKKR
3517525LKQALKKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017230469.10.0PREDICTED: transcription factor EGL1-like
TrEMBLA0A166JB040.0A0A166JB04_DAUCS; Uncharacterized protein
STRINGEOY247500.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45762435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-153bHLH family protein