PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_004494
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 1052aa    MW: 117115 Da    PI: 4.8554
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_004494genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.31.8e-1881127148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEde+l +av+++ g++Wk+Ia+++   Rt+ qc +rwqk+l
      DCAR_004494  81 KGQWTPEEDEILRQAVQRFNGKNWKKIAECFK-ERTDVQCLHRWQKVL 127
                      799****************************9.************986 PP
2Myb_DNA-binding621.2e-19133179148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+W++eEd++++++v+q G++ W+tIa++++ gR +kqc++rw+++l
      DCAR_004494 133 KGPWSKEEDDIIIQLVEQIGPKKWSTIAQHLP-GRIGKQCRERWHNHL 179
                      79******************************.*************97 PP
3Myb_DNA-binding47.44.4e-15185227145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +++WT eE+  l++a++ +G++ W+   ++++ gRt++++k++w+
      DCAR_004494 185 KDAWTLEEEMALIRAHQVYGNK-WAELTKYLP-GRTDNSIKNHWN 227
                      679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.99976127IPR017930Myb domain
SMARTSM007173.1E-1580129IPR001005SANT/Myb domain
PfamPF002495.4E-1681127IPR001005SANT/Myb domain
SuperFamilySSF466894.95E-1682137IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.9E-2483144IPR009057Homeodomain-like
CDDcd001676.32E-1484127No hitNo description
PROSITE profilePS5129432.127128183IPR017930Myb domain
SuperFamilySSF466897.86E-31130226IPR009057Homeodomain-like
SMARTSM007177.6E-18132181IPR001005SANT/Myb domain
CDDcd001672.15E-15135179No hitNo description
PfamPF139213.4E-18136196No hitNo description
Gene3DG3DSA:1.10.10.604.1E-27145186IPR009057Homeodomain-like
SMARTSM007171.6E-14184232IPR001005SANT/Myb domain
PROSITE profilePS5129418.347184234IPR017930Myb domain
CDDcd001673.04E-11187227No hitNo description
Gene3DG3DSA:1.10.10.601.9E-21187234IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0032875Biological Processregulation of DNA endoreduplication
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 1052 aa     Download sequence    Send to blast
MRVDSPESPN SDPPFQFHFV KLKALRRESV MVLRELDLHM EKQSPIGALR SLKWRFMRAF  60
DNHDVDYVCR RTSGPTRRST KGQWTPEEDE ILRQAVQRFN GKNWKKIAEC FKERTDVQCL  120
HRWQKVLNPE LVKGPWSKEE DDIIIQLVEQ IGPKKWSTIA QHLPGRIGKQ CRERWHNHLN  180
PSINKDAWTL EEEMALIRAH QVYGNKWAEL TKYLPGRTDN SIKNHWNSSV KKKLDSYLAS  240
GLLTQLQSVP QSLSSSSRVQ QYSGDDSIPR DGREAEETSE CSQASTALVC SQSTNDMVNA  300
TGREDPLLIE QSCHCEETEM PCEFASSGNL LVHNYPDDWI TSPGKDWQLD SNGLPNKSPH  360
CKQESTSLLH CVAEDENHEQ VPPSMQSSLA ICSSAPTGNI INECDQPKHM LVSEDSHPEV  420
RNEGSFAPGY SAKCSMITSA DGFTDSLLYH SSDYQIPESA HLPSNSYCSF TEMMVNECCQ  480
PFSVPTQFPD DGGNICGSNP DQFSGHSLQN QEEELLRAPH DGFTYPSGTI DSHFNERIDS  540
AGQQDQPDTQ GDCSNSTPEE IFAPTEFNNT MICPSLNENP AEPSEQDDAG GLFYEPPRFP  600
SLDIPFLSCD LIQNGADLQQ EYSPLGIRRL MTSSMNSFTP LKMWDSPTRD NSPDAVLKSA  660
AKSFTCTPSI LKKRHRDLVS PLSEKRCEKK LDSNFSNLAK DFSRLDVLSD KNGTHEAIPA  720
SPSTNMTTCS NASDENKENV TDDSEIKEKE EKECTVHLEN RLSSEETGTS PGDKIQEEIV  780
SYDAKTKQTA ACGQTVQEPS GVLDEKMYDM LSFSPDQFGN KSNRLQSSGA RTLGSQYTRR  840
LEAASSQVAV SESSGSPLLS ILSPSSAVRK KGDSHPVATS SIQPDSSTPS EIIFANARKF  900
DSSENFSIMG ETPFKRSIES PSAWKSPWFM NSFVPGPRID TDITIEDIGF FMSPGERSYD  960
AIGLMKQLSE HTAATFADAQ EVLGEETPDS ILKKRCSNKE KIDSTLNNVT ERRTLDFSEC  1020
DTTPRKGAES GRFSAGLSFS SPSSYLLKGC R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-65812346159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-65812346159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00505DAPTransfer from AT5G11510Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017229692.10.0PREDICTED: myb-related protein 3R-1 isoform X1
TrEMBLA0A166J6210.0A0A166J621_DAUCS; Uncharacterized protein
STRINGXP_009782666.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31072448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.21e-128myb domain protein 3r-4