PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_004239
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 635aa    MW: 70776.2 Da    PI: 6.6264
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_004239genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.11.8e-092972654
                 HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                  ++ErrRR+++ s++ eLr l+P+      + ++K +i + A+ YI++L
  DCAR_004239 29 LQAERRRREKLSSRLLELRALVPNI-----TNMTKPTIITDAISYIHEL 72
                 579*********************6.....58**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.3482372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-142490IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.03E-92577No hitNo description
Gene3DG3DSA:4.10.280.103.5E-122597IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.3E-72872IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-112978IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 635 aa     Download sequence    Send to blast
MAEEADFERK MGGGRDSDDD TEVFKSKNLQ AERRRREKLS SRLLELRALV PNITNMTKPT  60
IITDAISYIH ELKSRVQELS DQILAMEATI NEHEQQMERS EVDVAQDMNN WGIEPEVKVS  120
KIDTNKLWIK ILFQKTRGGF TRIIEAMTVL GFVPADMSVT TSKGAVLLTS HVENQVNNSA  180
GIAHRTRQAS RRITSELPIL PNQHNAAIPQ KRSNENPTLE HACIAEESLD HFNQHPTSSV  240
VETGAPASNL YLAKAWFHSS QPMTRSRSSE LRKRYVALQN SQTAFGIEAM NNLNASGHGI  300
GNLQQDLTNS NGFNKALFSD IPNPLNTFMS PSNSSSSNFN SPHMGTIDNV SSVVSMLKGS  360
LKRKRLDNQI EKSGEDRSLG YYDAQEIVGD PSLIQEQERH IYEAQGSFQD THAHQALGPG  420
VLQTVHGLMD IEEEILAPAN QVQINTVSRE QSQSESCAAT PAVSIGLDAY DGPSNSGQAP  480
SHCESSKKQV GNENISENGI KAKDVRERIN NALKDDRQQK GGLVRYGSVT SAGSADKTDP  540
TKKRRVERSR KMAEAKERVL TPVIPSDMQS VLKRCENLEK EVRSLKLNLS FMNRKDSEQT  600
KQIEELQKQN KDLINEKERL LEEIERIYSE TSKM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13136ERRRRE
23237RRRREK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00091SELEXTransfer from AT4G21330Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017224401.10.0PREDICTED: uncharacterized protein LOC108200674 isoform X1
TrEMBLA0A162B9A70.0A0A162B9A7_DAUCS; Uncharacterized protein
STRINGPOPTR_0003s10210.11e-171(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21330.13e-25bHLH family protein