PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_004058

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

Dof

Protein Properties

Length: 301aa MW: 32523 Da PI: 8.7747

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_004058	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.4	3.8e-39	17	75	4	62
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 alkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+++ DCAR_004058 17 LALKCPRCDSANTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVK 75 5789****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-28	18	73	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.1E-33	19	73	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.45	19	73	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	21	57	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MGGDKPTQEQ IQQQQNLALK CPRCDSANTK FCYYNNYSLS QPRHFCKACK RYWTRGGTLR 60 NVPVGGGCRK NKRVKRPAAA ASSTPVAVDL SNNSAKSAPI SAINSSNPLF YHGLQHNNLN 120 PNSSELNLSF NSRVDHGGNN SLFEYDLQPQ ISSLGFSSSG QIMGGDLVPK SMLSSYHHLP 180 NFGSFSSSVS ASPSMASLLS NIQQQKVLSS GVLGDTRSGG SHFLGFSQYE DHMQMQGSHD 240 NGGMSLKEFN TEESQNRSND NQIPQMVSSD PNSIMWNASG VGSWLDPAKS IGYNSVPSLI 300 *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017230798.1	0.0	PREDICTED: dof zinc finger protein DOF1.4 isoform X1
Refseq	XP_017230799.1	0.0	PREDICTED: dof zinc finger protein DOF1.4 isoform X2
TrEMBL	A0A166IRB4	0.0	A0A166IRB4_DAUCS; Uncharacterized protein
STRING	EOY28202	9e-63	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.2	1e-35	Dof family protein

Link Out ? help Back to Top
Phytozome	DCAR_004058