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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_004034 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | VOZ | ||||||||
Protein Properties | Length: 469aa MW: 52217.7 Da PI: 5.2508 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 374.3 | 3.9e-115 | 252 | 465 | 2 | 217 |
VOZ 2 ppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaaelfdls 99 ppsaflgpkcalwdc+rp+qg w +dycs+fhatla neg pg+tp+lrp+gi+lkd+llf+al+ak++gkevg+p cegaatak+pw+a+e+fdls DCAR_004034 252 PPSAFLGPKCALWDCPRPVQG--WNKDYCSTFHATLAPNEGRPGMTPILRPQGIGLKDNLLFSALRAKIEGKEVGVPDCEGAATAKCPWKAPEIFDLS 347 7*******************9..779************************************************************************ PP VOZ 100 llegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlelklvdekksak 197 ++egetirewlffdkprraf+sgnrkqrslpdy+grgwhe+ kqv +fggl+rsyymdpqp++++ewhlyey i++++++alyrl l vd+kk++k DCAR_004034 348 FIEGETIREWLFFDKPRRAFKSGNRKQRSLPDYEGRGWHETGKQVNSQFGGLRRSYYMDPQPMENLEWHLYEYGISKCETFALYRLSLERVDGKKNPK 445 ************************************************************************************************** PP VOZ 198 gkvskdsladlqkklgrlta 217 g+ kds+a+lqk++ l+a DCAR_004034 446 GRRGKDSVAHLQKQMKDLSA 465 ***************99986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 469 aa Download sequence Send to blast |
MGDGKENGVG GKHQVLKEKA KNRVDNLQRL FYDLQLARKE SRTNDVILLE EQVNQILLEW 60 QTELNQPSPA SSFQGGGSLG SFSSEIGRLL QVHEEGDDAI SRLPTLNSKP DMQNFCGNVA 120 PQQVDVSLGS LSWDLSGLLQ LGEEEDDATS GLPAPKLKHD VMQESGCNMD IRDTQVPYQD 180 GFVQVDQYKD PLLGATGMQV NNMGVPSQTD YNLFDSRQGL DQTFIAEINN TNICGEIAVP 240 QTDSFLPSVC HPPSAFLGPK CALWDCPRPV QGWNKDYCST FHATLAPNEG RPGMTPILRP 300 QGIGLKDNLL FSALRAKIEG KEVGVPDCEG AATAKCPWKA PEIFDLSFIE GETIREWLFF 360 DKPRRAFKSG NRKQRSLPDY EGRGWHETGK QVNSQFGGLR RSYYMDPQPM ENLEWHLYEY 420 GISKCETFAL YRLSLERVDG KKNPKGRRGK DSVAHLQKQM KDLSASTQ* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017218569.1 | 0.0 | PREDICTED: transcription factor VOZ1-like | ||||
Swissprot | Q9SGQ0 | 1e-155 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | A0A166IQH1 | 0.0 | A0A166IQH1_DAUCS; Uncharacterized protein | ||||
STRING | VIT_10s0003g00500.t01 | 1e-173 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2818 | 24 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28520.2 | 1e-150 | vascular plant one zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_004034 |
Publications ? help Back to Top | |||
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