PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_003800
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family Trihelix
Protein Properties Length: 355aa    MW: 39819 Da    PI: 9.523
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_003800genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix55.12e-1722116281
     trihelix   2 WtkqevlaLiearremeerlrrg...k............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 
                  Wt qe+++Liea++ +eer  ++   +             ++ +W++v +++++ g+ rs++qC++kw+nl +++kk+++ e++ ++ + +++ +
  DCAR_003800  22 WTVQETMVLIEAKKMDEERRMKRiqgEsssnegvrnlnkPAELRWKWVEDYCWRNGCLRSQNQCNDKWDNLMRDFKKVRDYERRMSDSKGENFEF 116
                  *************977777665322214455556665558999*****************************************98877777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.6551493IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.609.1E-41594IPR009057Homeodomain-like
PfamPF138376.8E-1321124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MANQGGNSST NVVLREYRKG NWTVQETMVL IEAKKMDEER RMKRIQGESS SNEGVRNLNK  60
PAELRWKWVE DYCWRNGCLR SQNQCNDKWD NLMRDFKKVR DYERRMSDSK GENFEFSYWK  120
MDKILRKEKH LPSNLLPQIY EALVDVVEKK GQRFYGSGGG GTSSTNPNMV TNVLGQVVHL  180
ERPIVCSTMV QPVVPLLPHM QHHISSLPLP LPPPQQLPQP SPLSPPLPES YPCPQPLTIV  240
DSQTSGQSNS SAKRRRRGEE TSNAAAAAAA SNSNHEVGSA ISRSASLIAG AIQANEEREE  300
RRHRELLNLH EKRLQIEESK AEINRQGISG MVDAINNLAH SVLALAANKK PPNS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754414e-33HG975441.1 Solanum pennellii chromosome ch02, complete genome.
GenBankHG9755144e-33HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017218147.10.0PREDICTED: uncharacterized protein LOC108195663 isoform X3
TrEMBLA0A166IHT20.0A0A166IHT2_DAUCS; Uncharacterized protein
STRINGXP_002515806.11e-117(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48212236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.16e-69Trihelix family protein