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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_003670 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | MYB_related | ||||||||
Protein Properties | Length: 72aa MW: 8145.17 Da PI: 10.0657 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.4 | 9.4e-10 | 3 | 46 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +WT++ + + +a +++ ++ +W +a+ +g g+t+++++ ++ DCAR_003670 3 SWTAQQNKAFEKALAKYDKDtpdRWYNVAKAVG-GKTAEEVRRHY 46 6********************************.**********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 13.122 | 1 | 54 | IPR017884 | SANT domain |
SMART | SM00717 | 8.1E-6 | 1 | 52 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.5E-8 | 3 | 46 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.94E-7 | 3 | 46 | No hit | No description |
SuperFamily | SSF46689 | 2.65E-13 | 3 | 58 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.3E-6 | 3 | 55 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 72 aa Download sequence Send to blast |
MASWTAQQNK AFEKALAKYD KDTPDRWYNV AKAVGGKTAE EVRRHYEILV TDVRRIENGN 60 VPFPKYRTTG G* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-32 | 4 | 71 | 11 | 78 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017220407.1 | 4e-47 | PREDICTED: protein RADIALIS-like 1 | ||||
Swissprot | F4JVB8 | 3e-35 | RADL1_ARATH; Protein RADIALIS-like 1 | ||||
TrEMBL | A0A166IDH4 | 1e-45 | A0A166IDH4_DAUCS; Uncharacterized protein | ||||
STRING | evm.model.supercontig_62.157 | 3e-39 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA202 | 24 | 231 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 1e-37 | RAD-like 1 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_003670 |
Publications ? help Back to Top | |||
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