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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_003669 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | MYB_related | ||||||||
Protein Properties | Length: 89aa MW: 10103.3 Da PI: 8.8292 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.9 | 2.3e-08 | 8 | 52 | 2 | 44 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 g WT + + + +a +++ ++ +W +a+ + g+t++++k ++ DCAR_003669 8 GFWTVQQNKAFEEALAKYDKDtpdRWYNVAKAIS-GKTAEEVKRHY 52 67********************************.**********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 4.3E-7 | 6 | 58 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 8.97E-13 | 8 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.26 | 10 | 56 | IPR017877 | Myb-like domain |
Pfam | PF00249 | 8.5E-6 | 10 | 52 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.9E-5 | 10 | 62 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.66E-6 | 10 | 52 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 89 aa Download sequence Send to blast |
MASMSSHGFW TVQQNKAFEE ALAKYDKDTP DRWYNVAKAI SGKTAEEVKR HYEILVADVK 60 RIENGDVPLP NYRTTRGNYQ GTMSTYIL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 4e-33 | 1 | 80 | 1 | 81 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017256311.1 | 1e-52 | PREDICTED: protein RADIALIS-like 1 | ||||
Swissprot | F4JVB8 | 2e-33 | RADL1_ARATH; Protein RADIALIS-like 1 | ||||
TrEMBL | A0A162B7K8 | 3e-60 | A0A162B7K8_DAUCS; Uncharacterized protein | ||||
STRING | XP_009594360.1 | 6e-39 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA202 | 24 | 231 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 7e-36 | RAD-like 1 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_003669 |
Publications ? help Back to Top | |||
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