PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_003648

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

DBB

Protein Properties

Length: 288aa MW: 32144.8 Da PI: 5.945

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_003648	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19.8	1.6e-06	4	42	5	37
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......H 37 C+ +e++e++ fC ++ lC C + H+ H DCAR_003648 4 QCDVCEKQEASVFCCADEAALCGPCDRQVHHAnklagkH 42 7***************************97443555555 PP
2	zf-B_box	29.7	1.4e-09	55	92	3	38
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 ++C+ ++e ++ fC++++ lC++C +++Hk Ht DCAR_003648 55 IPVCDICQERRAMVFCREDRAILCRECDDTIHKAneHT 92 589*****************************878865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.424	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	1.10E-7	3	47	No hit	No description
SMART	SM00336	1.0E-9	4	47	IPR000315	B-box-type zinc finger
SMART	SM00336	6.1E-12	53	100	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	10.694	53	100	IPR000315	B-box-type zinc finger
Pfam	PF00643	6.6E-8	55	92	IPR000315	B-box-type zinc finger
CDD	cd00021	6.15E-9	56	100	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MKIQCDVCEK QEASVFCCAD EAALCGPCDR QVHHANKLAG KHPRFSLIHP SPQDIPVCDI 60 CQERRAMVFC REDRAILCRE CDDTIHKANE HTERHNRFLL SGVKLSPLEP SFTCQTSTSS 120 NGSSYNNINA ATSESITEIN TTPIYDDNYH MQNHFQSQDY GITSGSTSSI SEYLMETLPG 180 WHIDEFLDPL SSQYGFCDKG TNNYMSPYID DSLQGLLGPI SSQDVVPQAP PLSDQAHFYE 240 TQEFNLGPVK VKSENEKNSK KGGKKWSRDG SAVIDKSAST KKSKRFW*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269\|PubMed:17965270, ECO:0000269\|PubMed:21070414}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017221113.1	0.0	PREDICTED: B-box zinc finger protein 20-like
Swissprot	Q9LQZ7	3e-65	BBX21_ARATH; B-box zinc finger protein 21
TrEMBL	A0A166ICQ4	0.0	A0A166ICQ4_DAUCS; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1463	23	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75540.1	2e-60	salt tolerance homolog2

Link Out ? help Back to Top
Phytozome	DCAR_003648

Publications ? help Back to Top
Xu D, et al. BBX21, an Arabidopsis B-box protein, directly activates HY5 and is targeted by COP1 for 26S proteasome-mediated degradation. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(27): p. 7655-60 [PMID:27325768] Xu DB, et al. The G-Protein β Subunit AGB1 Promotes Hypocotyl Elongation through Inhibiting Transcription Activation Function of BBX21 in Arabidopsis. Mol Plant, 2017. 10(9): p. 1206-1223 [PMID:28827171] Xu D,Jiang Y,Li J,Holm M,Deng XW The B-Box Domain Protein BBX21 Promotes Photomorphogenesis. Plant Physiol., 2018. 176(3): p. 2365-2375 [PMID:29259103] Job N,Yadukrishnan P,Bursch K,Datta S,Johansson H Two B-Box Proteins Regulate Photomorphogenesis by Oppositely Modulating HY5 through their Diverse C-Terminal Domains. Plant Physiol., 2018. 176(4): p. 2963-2976 [PMID:29439209] Crocco CD,Ocampo GG,Ploschuk EL,Mantese A,Botto JF Heterologous Expression of AtBBX21 Enhances the Rate of Photosynthesis and Alleviates Photoinhibition in Solanumtuberosum. Plant Physiol., 2018. 177(1): p. 369-380 [PMID:29555784] Kang X, et al. HRB2 and BBX21 interaction modulates Arabidopsis ABI5 locus and stomatal aperture. Plant Cell Environ., 2018. 41(8): p. 1912-1925 [PMID:29748960]