PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_003591 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | C3H | ||||||||
Protein Properties | Length: 1714aa MW: 189600 Da PI: 9.4471 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.1 | 4.9e-06 | 1584 | 1605 | 6 | 27 |
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+ + +tG+C+ G++Ck +H++ DCAR_003591 1584 CPKYEETGICPQGSQCKLHHPK 1605 *****************99985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 12.868 | 1474 | 1503 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0052 | 1474 | 1502 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 22 | 1503 | 1527 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.62 | 1529 | 1555 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.14 | 1529 | 1554 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.634 | 1556 | 1577 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.6 | 1556 | 1582 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.92 | 1578 | 1606 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.2 | 1583 | 1605 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0043484 | Biological Process | regulation of RNA splicing | ||||
GO:0060149 | Biological Process | negative regulation of posttranscriptional gene silencing | ||||
GO:0016607 | Cellular Component | nuclear speck | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1714 aa Download sequence Send to blast |
MEFNQFDHNR YVSHPPHHHR DAHRHHLPPP PPFHLPPPPP PLYPSLPPPP PPPPPPRHSD 60 FTFVNSSPRV SSGRLPEPYP VTRPDLARGS GGYNCESDYN SGGYESIDGY RDGNCNVNVN 120 RNRSQSQRSL WNGKNDDVVN YEGYGYSESR NSGFRVDNRE NSNYESRYVN VLRNERLLDE 180 RSKNWRSVDM ERNRNDIDLV RCVKERERER ERERERERIS FREREEEENF CTPQKKSVLL 240 RIGKPNEVRN SRSYEKNLSG SRGKDKAKAK EKERDRVVFP KFRLEDERER SPVDLDVSFR 300 SNGLVAKTIV TENGSPGKRY TPRSRKGRRK NAFYSPLTKV VEPSVWLGGS SHLRDSPSSC 360 EKTPMKVENN TDSGTVRMVR SSADTSSGET PEKVEYGLVS GGASETKSAG SREMKRCVQD 420 TVSDRSPKRS GFCESPSYRT RKKKKVASVI LHASDLELKK ESEDVTLNDS THIPHSPIQG 480 LMHMDKKISS VFIKNDDIVS LPSPVGLDVN NLDAVPQTIA SDMNNVTDYS GRSTLPNSTT 540 NSSLHLLDPL LPQESELEKD TSIAKMYVSV LDNVGTESEN DFTLSGISRE NDDTKEPPKS 600 GNCPSLEDGL CNRSSEGIMV SSIDFGFRST TVSNIDLIDA GAKQSAAIEN SNLLQADIEE 660 ACLDAANINI ELSKADADKV NDGTVNEHSF NCSPSSPSSS NFAITIGGEN IVSCPVDDTG 720 NQISHTETTI HVNTLVGDCL KAEVPTVGNV EVCSGMDYTS NGMKRKRFTR QNQSYLSSTK 780 TCDKQVKVVT QSLDEDNVIS CSVKDGSGAE NLHAAHQNVK DRGISAQGSV PNEIFLEVGI 840 VRTGTDVDLE GASPIKKIKV LHNDEKIVSG DGDGAALTPN KSLNNLEEER KELVHDKFIN 900 TNDASIPSQD TNTTIEALKP IKGDLALTRK KPTSAVPRVF TSPLSLHLSN SKRATPSNHN 960 AKSLSWHRPA TVIASAPASK TFSPPVSASK KSPRKAGKVQ GSSYIRKGNS LVRKPSTVSA 1020 IPYSSYASTV YRLNSSGKDD IRKSSGSGNK IGTNGSASWL RTRDGDENHK SSRSESIGVI 1080 AGSASQLITG GLSEGPKTLP LPQINKSKES TGGLVATSEG PKTPPLPQIN RSKDSIAIHA 1140 GDCTPSLLGN IPSDSSEASS TPLQQTSNVD ITNILEDDPK LSGTSEYRAG VESNFGNEML 1200 LDKGKAGGKI TYVKRKSNQL IATRNVNEMS NQAADKIQVL PSDSYYKRRR NQLIRASTDN 1260 QAMPREVPHS NAKGRTGGSL SKQHFNKGGY WVFNITIRKL LFSRKRDTIY TRSRRGFSLR 1320 MSKLLSVGGS SLKWSKSIEK NSKRANEEAT LAVAAVQKKK RDQKNAPCVV TGTKSRGNFS 1380 RERIFRIGSV RYKMDPTRRT LQRISDVEPS CSPTSNSENN VKKSYVPRRL VIGNDEYVRI 1440 GNGNQLIRDP KKRTRALASE KVRWSLHTAR LRLARKSKYC QFFTRFGKCN KDDGKCPYIH 1500 DHSKIAVCTK YLSGSCTSVN CKLTHKVIPE RMQDCSYYQQ GLCSNRSCPY RHVNVNANAS 1560 ICEGFLKGYC DDGNECRKKH TYVCPKYEET GICPQGSQCK LHHPKKRSKG IKRKSSRGQK 1620 NANGRYFGSR SVETTAVSEK LHLKNSDDIF NLEGKFTDYI SLDISDEEAG ETVDPMMEEI 1680 TVCASDVEAT DLNEQIKPIC LVQPSHHRTF SDH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6fbs_C | 1e-19 | 1480 | 1605 | 41 | 168 | Cleavage and polyadenylation specificity factor subunit 4 |
6fuw_C | 1e-19 | 1480 | 1605 | 41 | 168 | Cleavage and polyadenylation specificity factor subunit 4 |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 207 | 217 | RERERERERER |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017225574.1 | 0.0 | PREDICTED: uncharacterized protein LOC108201786 isoform X2 | ||||
TrEMBL | A0A166IAR9 | 0.0 | A0A166IAR9_DAUCS; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7568 | 5 | 5 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_003591 |