PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_003527
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 615aa    MW: 68833 Da    PI: 9.3902
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_003527genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.68.4e-12168213655
                  HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +++Er RR ri +++ +L+el+P+     +k  + a++L +AveY+k Lq
  DCAR_003527 168 SIAERVRRTRISDRIRKLQELVPNM----DKQTNTADMLDEAVEYVKLLQ 213
                  689*********************7....688***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.589162212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-14165219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.26E-11166217No hitNo description
Gene3DG3DSA:4.10.280.101.0E-13167217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-11168218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.8E-9168213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF056343.7E-92248438IPR023342APO domain
PROSITE profilePS5149925.844335420IPR023342APO domain
PfamPF056344.6E-25481592IPR023342APO domain
PROSITE profilePS5149928.564507592IPR023342APO domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000373Biological ProcessGroup II intron splicing
GO:0009658Biological Processchloroplast organization
GO:0010468Biological Processregulation of gene expression
GO:0015979Biological Processphotosynthesis
GO:0009507Cellular Componentchloroplast
GO:0003723Molecular FunctionRNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 615 aa     Download sequence    Send to blast
MQPTGNSANS GLSRGLARFR SAPATWLEAL LESEEEPEEE EDAKESIFHP SPAKPPPPAT  60
HYFSPPETMA KPGFLDPELL RSSPFLRQNS SPAEFLGQIS PAGGSDAYFS NFGVPANYDS  120
LSSTKRPREK GEKSGEFNGV DADMQKLFED SVPCRIRAKR GCATHPRSIA ERVRRTRISD  180
RIRKLQELVP NMDKQTNTAD MLDEAVEYVK LLQKQIQFGR GRGRRSKSIT FLCTDQRQAQ  240
NQPTGKWRVH RQNVDLPPIQ PKKKKKPYPI PLKQITQAAR ADKKLAQMGV EKPLLPPKNG  300
LLVPKLVPVA HDVLDAWKIV IQGVSQLLHV IPVHACSECS EVYVGQAAHY IQDCQGATSA  360
KRRNFHSWVK GSINDVLIPI DSYHLFDPFG PRVIHETRFA YDRIPALVEL CIQAGVDIPG  420
YPSRRRTVPI RMLGKKVIER GGSVEPPEQQ CSPDAASMLE FDTYRTHERF SSPLELEVPG  480
IAQKTIEAYE RVKIGLKKLM KKYTVKACGY CSEVHVGPWG HNAKLCGEFK HQWRDGKHGW  540
QDAIVDEVLP PNYVWHVEDP KGPPLRTALK RFYGKAPAVV ELCLQAGAQI PAKYKPMMRV  600
DIVVPDKEET HLAA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1260266PKKKKKP
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the stable assembly of several 4Fe-4S cluster-containing complexes of chloroplasts. May participate in 4Fe-4S cofactor incorporation into psaA and/or psaB during translation. {ECO:0000269|PubMed:15494558}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated during photomorphogenesis. {ECO:0000269|PubMed:15494558}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017229532.10.0PREDICTED: APO protein 1, chloroplastic
SwissprotQ9XIR40.0APO1_ARATH; APO protein 1, chloroplastic
TrEMBLA0A166I8R90.0A0A166I8R9_DAUCS; Uncharacterized protein
STRINGPGSC0003DMT4000585380.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.12e-47bHLH family protein
Publications ? help Back to Top
  1. Amann K,Lezhneva L,Wanner G,Herrmann RG,Meurer J
    ACCUMULATION OF PHOTOSYSTEM ONE1, a member of a novel gene family, is required for accumulation of [4Fe-4S] cluster-containing chloroplast complexes and antenna proteins.
    Plant Cell, 2004. 16(11): p. 3084-97
    [PMID:15494558]
  2. Watkins KP, et al.
    APO1 promotes the splicing of chloroplast group II introns and harbors a plant-specific zinc-dependent RNA binding domain.
    Plant Cell, 2011. 23(3): p. 1082-92
    [PMID:21421812]