PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_003484
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C2H2
Protein Properties Length: 347aa    MW: 38554.1 Da    PI: 6.8716
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_003484genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.56.1e-07142163223
                  EETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                   C  Cgk F+r  nL+ H+r H
  DCAR_003484 142 FCDVCGKGFKRDANLRMHMRAH 163
                  6*******************99 PP
2zf-C2H213.60.0002227250123
                  EEETTTT.EEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                  y+C+ C+ ksFs  s+L++H++ +
  DCAR_003484 227 YVCSRCNkKSFSVMSDLRNHLKHC 250
                  9********************977 PP
3zf-C2H212.20.00054258274521
                  TTTEEESSHHHHHHHHH CS
      zf-C2H2   5 dCgksFsrksnLkrHir 21 
                   Cg+sFsrk+ L  H+ 
  DCAR_003484 258 TCGTSFSRKDKLFGHMA 274
                  6**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.46E-6139165No hitNo description
SMARTSM003550.002141163IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.362141168IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.0E-6142165IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF128740.004142161No hitNo description
PROSITE patternPS000280143163IPR007087Zinc finger, C2H2
SMARTSM0035557189222IPR015880Zinc finger, C2H2-like
SMARTSM0035510227249IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.2E-4249274IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355220255279IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MSSSGDLRHF PANTITSSSL LTADPSIPLL NLAAVQTRID AVRTILSNSL QTQTLIGKVQ  60
LQSISDEITG SIQQIVVNGT ALISSSIPPT SPARPDPTLM FLDPELQSRS DIKPDIKLDT  120
VSDDWETIEL GSEELLAEFA HFCDVCGKGF KRDANLRMHM RAHGNEFKTL EALAKPEKGL  180
NFGVKKIRFS CPMIGCNRNK CHDKFKALKT VVCVKNHFKR SHCPKSYVCS RCNKKSFSVM  240
SDLRNHLKHC GEVKWKCTCG TSFSRKDKLF GHMALFEGHM PAIMEDEEKG KEVVEEKDSG  300
VNVSENRKFE GLIGEYGSIE EFCLDDMLNT SNDCSLVTQM DGFFDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A2e-111292813161Aart
2i13_B2e-111292813161Aart
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017232893.10.0PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
SwissprotQ943I62e-72STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBLA0A166I7N10.0A0A166I7N1_DAUCS; Uncharacterized protein
STRINGXP_009626824.11e-123(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA100002126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.32e-74C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]