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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
DCAR_003208 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family |
C3H |
Protein Properties |
Length: 360aa MW: 40284.6 Da PI: 7.8345 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
DCAR_003208 | genome | ARS-USDA | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 21 | 6.1e-07 | 3 | 26 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26
k++lC+f++ G C G++C F+H+
DCAR_003208 3 KRVLCKFYSH-GACLKGENCEFSHD 26
99****9999.*************5 PP
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2 | zf-CCCH | 24.4 | 5.2e-08 | 34 | 54 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26
C f+++ G C+yG+rC++ H+
DCAR_003208 34 VCTFYQK-GVCSYGSRCRYEHV 54
5******.***********997 PP
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3 | zf-CCCH | 17.5 | 7.2e-06 | 143 | 162 | 6 | 26 |
-SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26
C+ fa+ G C++G++C+ +Hg
DCAR_003208 143 CS-FAAAGNCPRGEKCPHIHG 162
66.**************9998 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00356 | 3.9E-5 | 1 | 27 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.859 | 1 | 28 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-7 | 3 | 26 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.8E-4 | 3 | 28 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.249 | 29 | 56 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.8E-4 | 31 | 55 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.88E-5 | 32 | 53 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-5 | 34 | 54 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.0E-4 | 34 | 53 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.38 | 137 | 164 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.016 | 138 | 163 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.0E-4 | 142 | 162 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF57850 | 2.3E-12 | 194 | 270 | No hit | No description |
Gene3D | G3DSA:3.30.40.10 | 1.8E-9 | 199 | 265 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
CDD | cd00162 | 7.83E-4 | 205 | 265 | No hit | No description |
Pfam | PF00097 | 7.4E-6 | 206 | 263 | IPR018957 | Zinc finger, C3HC4 RING-type |
SMART | SM00184 | 2.8E-6 | 206 | 263 | IPR001841 | Zinc finger, RING-type |
PROSITE profile | PS50089 | 12.076 | 206 | 264 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS00518 | 0 | 230 | 239 | IPR017907 | Zinc finger, RING-type, conserved site |
SMART | SM00356 | 0.082 | 293 | 321 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.319 | 293 | 322 | IPR000571 | Zinc finger, CCCH-type |
Sequence ? help Back to Top |
Protein Sequence Length: 360 aa
Download sequence Send
to blast |
MSKRVLCKFY SHGACLKGEN CEFSHDWKDP ANNVCTFYQK GVCSYGSRCR YEHVKVSRSQ 60 PCATSSSAVT LQYSGSFPAT NSSRNAASGR TAAEGVNREL LDSSRSFVPA TNPAWNEISA 120 LPQSLDDTYT RESGTNPAEL VMCSFAAAGN CPRGEKCPHI HGDLCPTCGK HCLHPFRLEE 180 REEHSRMCEK RHIHLEALKR SQEIECCVCL ERVLSKPTAA ERKFGLLSEC DHPFCVSCIR 240 NWRSSSPISG MDVNSALRAC PICRKLSYFV IPSVIWYSTK EEKQEIVDSY KSKLRSIDCK 300 HFDFGEGSCP FGTSCFYKHA YRDGHLEEVD LRHLGADDGM TVIAKDIRLS DFLNSLRLR*
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