PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_002870

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

C2H2

Protein Properties

Length: 166aa MW: 18457.8 Da PI: 10.5527

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_002870	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.9	0.00017	49	71	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F ++ L H++ H DCAR_002870 49 FSCQYCKKLFANSQALGGHQNAH 71 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	6.72E-6	48	76	No hit	No description
PROSITE profile	PS50157	11.572	49	76	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	7.5E-4	49	75	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	51	71	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
MAGNSTTTSD RSTQKPSAFK LFGFHVTNVH QEALPSKEDE NQQLECMKFS CQYCKKLFAN 60 SQALGGHQNA HKRERQSLKH RHQLRGKGHR LIAPAPPLPP CLAAARWPQN GYGVRSPWLQ 120 WSPAFQQFCA RYGNDGTNAN RTLAVKGQGS ANVDLNLKLR PSNYN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017222545.1	1e-122	PREDICTED: zinc finger protein 6-like
TrEMBL	A0A166HG90	1e-120	A0A166HG90_DAUCS; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10563	17	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06650.1	7e-13	C2H2 family protein

Link Out ? help Back to Top
Phytozome	DCAR_002870