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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
DCAR_002800 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family |
C3H |
Protein Properties |
Length: 390aa MW: 42044.4 Da PI: 8.1332 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
DCAR_002800 | genome | ARS-USDA | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 31.7 | 2.6e-10 | 52 | 75 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27
+C ++++tG C yG++C+++H++
DCAR_002800 52 QNCAYYMQTGSCGYGNKCRYNHPR 75
68********************96 PP
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2 | zf-CCCH | 40.7 | 3.9e-13 | 104 | 130 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
+++++C+f++rtGtCkyG++C+F+H++
DCAR_002800 104 FGEPECQFYLRTGTCKYGATCNFHHPR 130
5789*********************96 PP
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3 | zf-CCCH | 35 | 2.3e-11 | 152 | 176 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27
+ +C ++++tG+CkyG +Ck++H++
DCAR_002800 152 EIECAYYMKTGHCKYGITCKYHHPQ 176
568********************97 PP
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4 | zf-CCCH | 33.4 | 7.6e-11 | 307 | 331 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26
++ +C++++++G C++G +Ck++H+
DCAR_002800 307 GETECQYYMKNGDCRFGLSCKYHHP 331
7789********************8 PP
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5 | zf-CCCH | 31 | 4.2e-10 | 354 | 377 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26
C+f++++G+Ck+G +CkF H+
DCAR_002800 354 VQACNFYMQNGHCKFGHTCKFDHP 377
568********************9 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
PROSITE profile | PS50103 | 12.859 | 48 | 76 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.9E-4 | 48 | 75 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.09E-6 | 51 | 76 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.6E-8 | 51 | 75 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.0E-5 | 54 | 75 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.197 | 103 | 131 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.0E-6 | 103 | 130 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-10 | 104 | 130 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.79E-6 | 106 | 131 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.3E-5 | 109 | 130 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.141 | 149 | 177 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.3E-5 | 149 | 176 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.6E-9 | 152 | 176 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-5 | 153 | 176 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.4E-4 | 155 | 175 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.986 | 305 | 333 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.8E-5 | 305 | 332 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.1E-8 | 307 | 331 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-5 | 308 | 333 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.516 | 351 | 379 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.4E-5 | 351 | 378 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.79E-6 | 353 | 378 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.4E-8 | 353 | 377 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-4 | 356 | 376 | IPR000571 | Zinc finger, CCCH-type |
Sequence ? help Back to Top |
Protein Sequence Length: 390 aa
Download sequence Send
to blast |
MELYGHGAGA NGSSGDRVAE WPTAGQETGL EESMMRLGLF GGEFYPERGG VQNCAYYMQT 60 GSCGYGNKCR YNHPRDRSLW PNTSNVVMVG GTVRTTGGEF PERFGEPECQ FYLRTGTCKY 120 GATCNFHHPR NGGGSLSNAP VNIYGYPLRP GEIECAYYMK TGHCKYGITC KYHHPQMPGL 180 SVAAPARPSY ATVQSSVPPP EQYGGATTNY GVPRPPLLPG SYVPGGYGPL LLPQGVMPVP 240 NWSPYSGPVS PAMSPGVQPS VRAASLYGMT PLSSSAPAFG GPYAPLPSSA GPSTTSQMEH 300 LFPQRPGETE CQYYMKNGDC RFGLSCKYHH PADWMASKKN CVLSHLGLPL RQGVQACNFY 360 MQNGHCKFGH TCKFDHPVAA SDTIHQLHL*
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