PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_002791
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family DBB
Protein Properties Length: 390aa    MW: 43102.6 Da    PI: 6.4916
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_002791genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.84e-072668237
     zf-B_box  2 eerkCpeHee.kelqlfCedCqqllCedClleeHkg......H 37
                 ++r C+ ++e  ++ l+C+ +   lC  C ++ H+       H
  DCAR_002791 26 KNRLCDFCGEdSKAVLYCRADAAKLCLRCDFQVHSTnqlftkH 68
                 6899*****8666*********************655566555 PP
2zf-B_box21.83.8e-0771114342
     zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg....Htvvpl 42 
                     C+ ++  + ++fC + +  lC++C  e+H +    H+++pl
  DCAR_002791  71 YLLCDSCDASPCSIFCSNHGLVLCQNCDWESHGSgsvlHDRRPL 114
                  568*****************************548999998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003365.8E-132573IPR000315B-box-type zinc finger
PROSITE profilePS501199.6842573IPR000315B-box-type zinc finger
PfamPF006431.4E-52668IPR000315B-box-type zinc finger
CDDcd000212.82E-62860No hitNo description
PROSITE profilePS5011910.40969114IPR000315B-box-type zinc finger
CDDcd000216.50E-573114No hitNo description
SMARTSM003361.974114IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MSALSRISSG LVQETKKAKT QEEETKNRLC DFCGEDSKAV LYCRADAAKL CLRCDFQVHS  60
TNQLFTKHSR YLLCDSCDAS PCSIFCSNHG LVLCQNCDWE SHGSGSVLHD RRPLDGFSGC  120
PSVTELLATF GIEDLGQRKK KSCGFDDYLI WDTPCIVGLD DLIVSDGSDH NFVATGVPPL  180
PKNRNAVCGQ HKEEIISQLR QMVKLEPNFG DDQFDIELFS GFQSSAFKDN CQQKDACFDF  240
EHNMEATYLP SNAAGALKYC SVSSGEGEDL PSIPLQNFFS TDCKVPDGKP ESVQSLNQGN  300
SGHGTQVDAS VNVSVPQIFP KVAPREFSSQ ERDNALTRYK EKKKCMRKKS GMNHARFVQK  360
AEKELGGDLL KRITDRSCPQ VVKYVGTLR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1337348RYKEKKKCMRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017229749.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 13
TrEMBLA0A166HE130.0A0A166HE13_DAUCS; Uncharacterized protein
STRINGXP_009791542.11e-104(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA73622228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.11e-70B-box type zinc finger protein with CCT domain