PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_002739
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 635aa    MW: 70931.5 Da    PI: 5.8646
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_002739genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.92.1e-14446492455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  DCAR_002739 446 NHVLAERRRREKLNERFVILRSLVPFV-----TKMDKASILGDTIEYVKQLR 492
                  7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.1E-5113189IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.606442491IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.2E-19444508IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.8E-12446491IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.61E-14446496No hitNo description
Gene3DG3DSA:4.10.280.103.0E-19446508IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-17448497IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 635 aa     Download sequence    Send to blast
MASPPPYKSN AHQNMLQAAV QAVNWTYSLF WQLSPEKQRV LVWGDGYYNG AIKTRKTVNS  60
VEVSTEEASL ERSQQLRELY DSLSTGDLNN PSRRPAALSP EDLTESEWFY LMCVSFSFPL  120
GVGLPGKAYV KRQHLWLKGA NEASSKHFTR AILAKTVVCI PLLDGVVELG TTDKVEEKIE  180
FIEQVKSYFI NCNNQATHPP KPALSEHSTS NLISPSRLVE MDDDDENDDD NDDDDDAGEE  240
DDDEGDGIDV EAEAARTPTP FGSVDPRNVV GDIEGEPRLQ VMLHHMSNDN IHLGSPESGS  300
NNLDSDFHLL KVSQPGIPID PYVPGSKWIH APLTAAITAE DELLEEHNHY SQTITTILHN  360
RNFSGRSSGT SSAVYSIHSP QSSFSICTAA ATSRSHRHSN RTSQYLLKYI LFTVPYLHSK  420
SLDNTAEDSV MLQLKKSASQ EELSANHVLA ERRRREKLNE RFVILRSLVP FVTKMDKASI  480
LGDTIEYVKQ LRKKIHELEA REHHVNEDAD CVDQRLGNRG DSRRDKRKMR VVEQGGRRVV  540
KAAEVQQETT MEVSIIENDG LVEIKCPYKE GLLLDVMMKL REFRMEITAA HSSSSSNGGF  600
VAELRAKVKE TVNGKKASIT EVKKAMKNII PSHP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A3e-2451892192Transcription factor MYC3
4rqw_B3e-2451892192Transcription factor MYC3
4rs9_A3e-2451892192Transcription factor MYC3
4yz6_A3e-2451892192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1450455ERRRRE
2451456RRRREK
3523529RDKRKMR
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017229436.10.0PREDICTED: basic helix-loop-helix protein A isoform X1
SwissprotE3SXU40.0BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A162B5080.0A0A162B508_DAUCS; Uncharacterized protein
STRINGEOX947960.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA90282022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.12e-87bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]