PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_002677
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ARR-B
Protein Properties Length: 662aa    MW: 72620 Da    PI: 6.2853
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_002677genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.33.6e-28219272155
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  kpr++W+ eLH++Fv+av+qL G+ekA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  DCAR_002677 219 KPRVVWSVELHQQFVSAVNQL-GIEKAVPKRILELMNVPGLTRENVASHLQKFRL 272
                  79*******************.********************************8 PP
2Response_reg76.59.4e-26351431109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vdD+ + +++++q+l++  y  +++++++++al+ll+ek+  +Dl+l D+ mp+mdG++ll+     e++lp+i+++a g  + + + +k Ga 
   DCAR_002677  35 VLVVDDDFTCLRIVEQMLRRCSY-LATTCSQATAALNLLREKKgcFDLVLSDVHMPDMDGFKLLELVGL-EMDLPVIMMSADGRTSAVMRGIKHGAC 129
                   89*********************.9***************************************87754.558************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ +eel +
   DCAR_002677 130 DYLIKPIREEELKN 143
                   ***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363922.9E-16215659IPR017053Response regulator B-type, plant
SuperFamilySSF521725.12E-3532159IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.7E-4132168No hitNo description
SMARTSM004481.2E-2933145IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.82434149IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.8E-2235143IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.72E-2636148No hitNo description
Gene3DG3DSA:1.10.10.601.2E-29216277IPR009057Homeodomain-like
PROSITE profilePS5129410.471216275IPR017930Myb domain
SuperFamilySSF466893.76E-19217276IPR009057Homeodomain-like
TIGRFAMsTIGR015573.6E-24219272IPR006447Myb domain, plants
PfamPF002491.6E-6221270IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
MATLQKLPYV SSCSTASSYG VHSDKGDMFP AGLRVLVVDD DFTCLRIVEQ MLRRCSYLAT  60
TCSQATAALN LLREKKGCFD LVLSDVHMPD MDGFKLLELV GLEMDLPVIM MSADGRTSAV  120
MRGIKHGACD YLIKPIREEE LKNIWQHVVR KKWNETKEQE NSSSLDESDR HRRGTDDVEY  180
ASSANEGSEG ILKAQKKRRD VKEEDDGEFD NDDPSASKKP RVVWSVELHQ QFVSAVNQLG  240
IEKAVPKRIL ELMNVPGLTR ENVASHLQKF RLYLKRLSGV SQQQIGLPNS FCGHIEQNPK  300
LGPLERFDFQ ALAASGQIPP QTLVALHAEL LGQPAGNVVL PAIHQQFLLQ GSRQGQESVR  360
GDVGVAYGQP LIKCPSNISK QFTQESPEDV NSNFKTWSSN SLGSIGPSSN LTGLASQNGN  420
TLMGVMQNQQ QLQRMLQEQQ HKQSVVQEST PSINVQPSCL VVPAQPPSFQ VVNRPSISQS  480
CSFPGAEAIF SSADVTTPQP NNSIFAVGQM LGVNHKTAKI LDGYSVAGPV SPSVSSCSGI  540
AENNALRRVQ NSAPEFNASR QVPVLFRDMN DCQGSYSEKS SHVLDHGTLR NIGFVGKEAC  600
IPSRFAVDEV EAPISCNGST YRENGKKVKQ EPNLDFIESV NMSNPMMQYF SPNDVMSVFS  660
E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A8e-24215278164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017229628.10.0PREDICTED: two-component response regulator ARR14-like isoform X1
SwissprotQ8H7S71e-156ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBLA0A166HAV30.0A0A166HAV3_DAUCS; Two-component response regulator
STRINGVIT_01s0011g05830.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77492130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.11e-121response regulator 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]