PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_002635
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C2H2
Protein Properties Length: 507aa    MW: 55345.1 Da    PI: 9.9576
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_002635genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.5e-055072123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 + C+ C+k F r  nL+ H r H
  DCAR_002635 50 FICEVCNKGFQREQNLQLHRRGH 72
                 89*******************88 PP
2zf-C2H214.10.00014127149123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ykC +C+k++  +s+ k H +t+
  DCAR_002635 127 YKCDKCSKRYAVQSDWKAHSKTC 149
                  9******************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF121711.8E-54972IPR022755Zinc finger, double-stranded RNA binding
SuperFamilySSF576671.31E-85072No hitNo description
PROSITE profilePS5015710.995072IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.2E-55072IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00525072IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805272IPR007087Zinc finger, C2H2
SMARTSM0035514092122IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.1E-6115148IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.31E-8122147No hitNo description
SMARTSM0035575127147IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MFFGARGEDQ GQMTQQHSTM FNSSTAPAAA AAAAAPQKKK RNLPGTPSKF ICEVCNKGFQ  60
REQNLQLHRR GHNLPWKLKK KTTNEVIKRK VYLCPEPTCI HHDPSRALGD LTGIKKHYSR  120
KHGEKKYKCD KCSKRYAVQS DWKAHSKTCG TREYRCDCGT LFSRHPSSIS SHIFGNNPMH  180
LNLSQAQIHS NNMLRLGSGT STSGAKLEQL SSSSSLFTTQ PPQSPYFMPP PDSNQGFQEL  240
QNKSFHGLMQ LPDHLQTNRS NSLSAASNLF NLSFYPSSNT TNSISNSTDN SSSFLIQDHQ  300
FGNEGNTSIF SGNNTIYNTS HDHQSPALGP MSATALLQKA AQMGSTTSNT NAALLRGLGS  360
SNRTSSITDA NKFGRSNFNT ENEHQQLEGL TNPFANGNYG SHGADHHQHN NNFAAFGGNT  420
MRSQMDDVGA AGKMHHNVLQ STKGPSGDGL TLDFLGIGGG RARNSSIEFS QRDHQAATNN  480
ETTSLDNPRL SSLSQVRHSF GNPKLQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C9e-23123192372Zinc finger protein JACKDAW
5b3h_F9e-23123192372Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017237074.10.0PREDICTED: protein indeterminate-domain 5, chloroplastic-like
TrEMBLA0A166H9L80.0A0A166H9L8_DAUCS; Uncharacterized protein
STRINGVIT_01s0010g02090.t011e-146(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.12e-79indeterminate(ID)-domain 5