PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_002201
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family TALE
Protein Properties Length: 271aa    MW: 30682.2 Da    PI: 6.5116
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_002201genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.18.2e-101952311955
                  HHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
     Homeobox  19 FeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                   +k +yps++++  LA+++gL+++q+ +WF N+R ++
  DCAR_002201 195 HYKWPYPSEQQKIALAESTGLDQKQINNWFINQRKRH 231
                  45679*****************************885 PP
2ELK41.13.6e-14151172122
          ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                  ELK qLlrKYsgyLg+LkqEF+
  DCAR_002201 151 ELKGQLLRKYSGYLGNLKQEFM 172
                  9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.4E-1756100IPR005540KNOX1
PfamPF037901.8E-205896IPR005540KNOX1
PROSITE profilePS5121311.121151171IPR005539ELK domain
SMARTSM011884.5E-8151172IPR005539ELK domain
PfamPF037895.1E-11151172IPR005539ELK domain
PROSITE profilePS5007113.248171234IPR001356Homeobox domain
SMARTSM003892.7E-13173238IPR001356Homeobox domain
SuperFamilySSF466891.24E-19173245IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.0E-29176237IPR009057Homeodomain-like
CDDcd000861.62E-13183235No hitNo description
PfamPF059208.4E-18191230IPR008422Homeobox KN domain
PROSITE patternPS000270209232IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MDFGSSSCLM GTYGSGDNNN HHEILQHFHH DQLIEDHNNN NPSRRHGNSS GSSSSASVKA  60
KIMAHPHYSR LFAAYISCQK IGAPPDVVAR LEEAYASVSV MGGGSTIGED PALDQFMEAY  120
SFEAMDRNGG SSEEDADTEN NPVDPQAEDQ ELKGQLLRKY SGYLGNLKQE FMKKRKKGKL  180
PKEARQQLLE WWSRHYKWPY PSEQQKIALA ESTGLDQKQI NNWFINQRKR HWKPSEDMQF  240
MVMDAARPHY NYMDNVVANP FPMDIAPPFI *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166175LKQEFMKKRK
2172176KKRKK
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017240335.10.0PREDICTED: homeobox protein SBH1-like
RefseqXP_017240341.10.0PREDICTED: homeobox protein SBH1-like
SwissprotP466081e-105HSBH1_SOYBN; Homeobox protein SBH1
TrEMBLA0A166GZS90.0A0A166GZS9_DAUCS; Uncharacterized protein
STRINGXP_002518420.11e-114(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68352433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62360.11e-103KNOX/ELK homeobox transcription factor
Publications ? help Back to Top
  1. Shu Y, et al.
    GmSBH1, a homeobox transcription factor gene, relates to growth and development and involves in response to high temperature and humidity stress in soybean.
    Plant Cell Rep., 2015. 34(11): p. 1927-37
    [PMID:26205508]