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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_002110 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | C3H | ||||||||
Protein Properties | Length: 144aa MW: 15808.7 Da PI: 8.4584 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 37.8 | 3.2e-12 | 51 | 75 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +lC++f+ tG C+yGd+Ck+ H++ DCAR_002110 51 PPLCNRFLSTGSCPYGDSCKYLHPK 75 69*********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.37E-14 | 4 | 44 | No hit | No description |
Pfam | PF06220 | 2.5E-8 | 5 | 37 | IPR013085 | Zinc finger, U1-C type |
PROSITE profile | PS50103 | 16.37 | 48 | 76 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.2E-6 | 48 | 75 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.05E-7 | 49 | 78 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.0E-10 | 51 | 75 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.2E-9 | 53 | 79 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 144 aa Download sequence Send to blast |
MPLGKYYCDY CDKEFQDTAY ARKRHLQSIQ HQRAKSLWYQ NYPSALPFPS PPLCNRFLST 60 GSCPYGDSCK YLHPKQNLQS ANTSVSNFTG NFQSLDTNQQ AAGASSQGNI LRDGLGVSLG 120 NLPPSLKPPP EGGYPSLPFV DWG* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ521279 | 4e-31 | KJ521279.1 Daucus capillifolius clone cap279764 anonymous marker DC17915 genomic sequence. | |||
GenBank | KJ521283 | 4e-31 | KJ521283.1 Daucus carota subsp. carota clone car279759 anonymous marker DC17915 genomic sequence. | |||
GenBank | KJ521289 | 4e-31 | KJ521289.1 Daucus carota subsp. carota clone carA30254 anonymous marker DC17915 genomic sequence. | |||
GenBank | KJ521293 | 4e-31 | KJ521293.1 Daucus carota subsp. carota clone carA30261 anonymous marker DC17915 genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017258482.1 | 1e-102 | PREDICTED: zinc finger CCCH domain-containing protein 3 | ||||
Swissprot | Q0JP11 | 4e-40 | C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3 | ||||
TrEMBL | A0A166GX55 | 1e-101 | A0A166GX55_DAUCS; Uncharacterized protein | ||||
STRING | VIT_14s0060g00610.t01 | 2e-55 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12008 | 18 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26749.1 | 1e-46 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_002110 |
Publications ? help Back to Top | |||
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