PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_002108

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

SRS

Protein Properties

Length: 354aa MW: 36834.7 Da PI: 8.414

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_002108	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	216.4	6.5e-67	112	268	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkele 101 a+CqdCGnqakkdC+h+RCRtCCksrgfdC+thvkstWvpaa+rrerq + a ++a +s +++++k+++ ++q+a+s+t++s+++++++ + DCAR_002108 112 SVATCQDCGNQAKKDCSHRRCRTCCKSRGFDCSTHVKSTWVPAARRRERQLMGVAG-ATAGSSGSTSSAKKPKL---TSQTATSHTSTSNTTPPRSYD 205 5579******************************************97665554.44555556666666665...68999999999**9999 PP DUF702 102 tss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 tss lP +v+++avf+cvrv++v+dg++e+aYq++v+igGhvfkG+LydqG+e+ DCAR_002108 206 TSSshqdagfkeaLPGQVRAPAVFKCVRVTAVEDGDDEYAYQAVVNIGGHVFKGFLYDQGVEA 268 999999****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.4E-61	114	267	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	4.6E-27	115	157	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	5.8E-30	219	266	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0048364	Biological Process	root development
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MLGLRDVFVV APASSFHGDA VNVSDPHQMS AANAAAAFGV GVIPLLTASP CYNEDERRNN 60 STNSGSGIQF WQQMQQQQNA SYFKKPGSVH DHHQTVAANL LQGGGAASSS SSVATCQDCG 120 NQAKKDCSHR RCRTCCKSRG FDCSTHVKST WVPAARRRER QLMGVAGATA GSSGSTSSAK 180 KPKLTSQTAT SHTSTSNTTP PRSYDTSSSH QDAGFKEALP GQVRAPAVFK CVRVTAVEDG 240 DDEYAYQAVV NIGGHVFKGF LYDQGVEANR EGFPNLSELH LGGGGSGTGG GVRNIGSSSA 300 PVIDQSDIYT AGGGGGMIGS SNYVLIRCLG ASYSRRPPVS FIGGLSSINQ VSE*

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MLGLRDVFVV APASSFHGDA VNVSDPHQMS AANAAAAFGV GVIPLLTASP CYNEDERRNN  60
STNSGSGIQF WQQMQQQQNA SYFKKPGSVH DHHQTVAANL LQGGGAASSS SSVATCQDCG  120
NQAKKDCSHR RCRTCCKSRG FDCSTHVKST WVPAARRRER QLMGVAGATA GSSGSTSSAK  180
KPKLTSQTAT SHTSTSNTTP PRSYDTSSSH QDAGFKEALP GQVRAPAVFK CVRVTAVEDG  240
DDEYAYQAVV NIGGHVFKGF LYDQGVEANR EGFPNLSELH LGGGGSGTGG GVRNIGSSSA  300
PVIDQSDIYT AGGGGGMIGS SNYVLIRCLG ASYSRRPPVS FIGGLSSINQ VSE*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017250269.1	0.0	PREDICTED: protein LATERAL ROOT PRIMORDIUM 1
Swissprot	Q94CK9	4e-91	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A166GX39	0.0	A0A166GX39_DAUCS; Uncharacterized protein
STRING	GLYMA02G44860.2	1e-116	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7655	23	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	2e-81	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	DCAR_002108

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]