PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_002048
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 383aa    MW: 41087.6 Da    PI: 6.937
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_002048genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.41.1e-12316361655
                  HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +++Er RR +i +++ +L+el+P+     +k  + a++L +Av+YIk+Lq
  DCAR_002048 316 SIAERVRRTKISERMRKLQELVPNM----DKQTNTADMLDLAVDYIKDLQ 361
                  689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.262310360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-16313371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.40E-13314365No hitNo description
Gene3DG3DSA:4.10.280.102.3E-15315369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.4E-14316366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-9316361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0042335Biological Processcuticle development
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MEQQNNSGLT RYRSAPSSYF ADMMNGGLFG GEEVADQFLN PRAGSPDSDR FFSRFMSSCG  60
GEDSNLVSVC DERVGGFVNE PVQAQFMAPM KCEPDVAHAH PQQMGSMGVN SLNQMKMAGG  120
SNLNLIRQSS SPAGLFAQVN IDNAGYAVMR GMGNSGPASS THADSSFSSG SRLNNQMDFP  180
PSTPSSSSVI PHAFKVEGKS FGTGRPEVGN YGEGRINDGG YLTGGSRDTS WDDSALLSDD  240
FLAGLAGNDR NAFSNINSSR NQTSEGGSRP SSALAHHLSL PTSSAELSAM EHLLQFPDSV  300
PLKIRAKRGC ATHPRSIAER VRRTKISERM RKLQELVPNM DKQTNTADML DLAVDYIKDL  360
QKQVKTLSDV RANCTCSSKQ KT*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00646PBMTransfer from LOC_Os08g39630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017257948.10.0PREDICTED: transcription factor bHLH130-like
TrEMBLA0A166GVC10.0A0A166GVC1_DAUCS; Uncharacterized protein
STRINGVIT_06s0004g01740.t011e-107(Vitis vinifera)
STRINGXP_008352410.11e-105(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46052239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.12e-52bHLH family protein