|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
DCAR_002027 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
|
Family |
C3H |
Protein Properties |
Length: 230aa MW: 24229.1 Da PI: 8.6948 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
DCAR_002027 | genome | ARS-USDA | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 24.1 | 6.1e-08 | 33 | 58 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
k +lC+ + Ck+Gd+C+FaHg+
DCAR_002027 33 KSRLCNKYNSAEGCKFGDKCHFAHGE 58
6799******99************96 PP
|
2 | zf-CCCH | 37.4 | 4.2e-12 | 196 | 220 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
+kt+lC +fa+ G C +GdrC+FaHg
DCAR_002027 196 FKTKLCENFAK-GSCTFGDRCHFAHG 220
69*********.*************8 PP
|
Protein Features
? help Back to Top |
|
Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
Gene3D | G3DSA:4.10.1000.10 | 2.3E-13 | 29 | 62 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.72E-8 | 30 | 62 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.915 | 31 | 59 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.9E-6 | 33 | 58 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.025 | 33 | 58 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 4.68E-16 | 93 | 176 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 5.1E-13 | 102 | 172 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 14.718 | 103 | 167 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 6.8E-17 | 103 | 171 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 1.4E-12 | 105 | 169 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 1.10E-15 | 105 | 168 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 4.6E-16 | 194 | 226 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.93E-9 | 195 | 225 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.962 | 195 | 222 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.7E-8 | 195 | 221 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-9 | 196 | 220 | IPR000571 | Zinc finger, CCCH-type |
Sequence ? help Back to Top |
Protein Sequence Length: 230 aa
Download sequence Send
to blast |
MTGNNPAAPA RNHGQPSFGQ PSFPDGSSPP AIKSRLCNKY NSAEGCKFGD KCHFAHGEWE 60 LGRPTVPYHE DPRGMGPMPG SRFGSRMEPT PPSYGTGTSF GANATAKISV DASLAGAIIG 120 KNGVNSKQIC RQTGAKLSIR EHEADPNLRN IELEGTFDQI KQASQMVQEL IVSIGSASGP 180 PPKSHAMSGT GPANNFKTKL CENFAKGSCT FGDRCHFAHG AEDLRKSGI*
|