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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
DCAR_001801 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family |
C3H |
Protein Properties |
Length: 455aa MW: 48271.3 Da PI: 8.1935 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
DCAR_001801 | genome | ARS-USDA | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 41.6 | 2.1e-13 | 118 | 144 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
ykte+Cr + +GtC+yG++C+FaHg+
DCAR_001801 118 YKTEICRSWEDFGTCRYGAKCQFAHGK 144
9************************96 PP
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2 | zf-CCCH | 27.7 | 4.8e-09 | 160 | 182 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26
t +Cr ++ GtC+yG++C+F+H
DCAR_001801 160 TQICRAYSS-GTCSYGSQCRFSHE 182
889******.*************5 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
Gene3D | G3DSA:4.10.1000.10 | 3.5E-17 | 115 | 149 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.67E-10 | 116 | 148 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.7E-8 | 117 | 144 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.399 | 117 | 145 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.4E-10 | 118 | 144 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.8E-7 | 155 | 183 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.55E-6 | 155 | 184 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-5 | 157 | 183 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.741 | 157 | 184 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.7E-7 | 160 | 182 | IPR000571 | Zinc finger, CCCH-type |
Sequence ? help Back to Top |
Protein Sequence Length: 455 aa
Download sequence Send
to blast |
MALRSGISPF SNTPVGVYNH TPRSPGFDLR ANSNVLNSSE NLESPIVRYY RSGGSPLSAI 60 ENLDISPNTL FKTSVKVEED VLVMDGILVG PVAASRVRSS SSTSDSGGSS SSGGKSFYKT 120 EICRSWEDFG TCRYGAKCQF AHGKEELRPT RFFNKSKSET QICRAYSSGT CSYGSQCRFS 180 HEQTNSPASG TDSPFTLASR TVSQNNSPAS ATDSPIPASK TQAVLPIKLE KAMNCAGRSP 240 LTARTISQNN SPASSKDSPL CAIPSEILLP MKLEKAAKCA GKSPLTTRTT ITLNNSPASL 300 EDSPFSVIPS ETLLPGKLEE SMNCAGKSLS TTQIVSQHNS PASATDSPVS MIPSKPGTVS 360 PINLEKPMTC AGKTSITPTV SPIKLQNAMD CSESFIFANS DWSPLDDDIE VALPCSSSAD 420 KALSREEVDA YINRVLYGPS KRKTLPAFAA ICPR*
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