PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_001132
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family Trihelix
Protein Properties Length: 454aa    MW: 51614.3 Da    PI: 6.5776
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_001132genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix74.12.3e-23127224186
     trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 
                  +Wt+ +v+++i+a+++++e++ +++           +kk++W++vsk+m+erg  +sp+qC++k+++lnkryk+++e+ +++ t+e++++ ++++ l+
  DCAR_001132 127 KWTDVMVRLMITAVSYIGEEVAAESgggarrkyanlQKKGKWKSVSKVMAERGHFVSPQQCEDKFNDLNKRYKRLNEILGRGtTCEVVENNSLLEVLD 224
                  7********************987667778889999**********************************************77***99999988776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.5E-21125250No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MEGNLQSGNM FSGMGAYGGG GGLDLQGCLG VHHHQQPSSL QQHQQQQQQQ QQQSDCGQGG  60
IPHPSIHDNF PHATGGRQDY DQTISMAEYS RGKHSASDEE PSFTDDAADG HSYGSRGNNV  120
PHWHRVKWTD VMVRLMITAV SYIGEEVAAE SGGGARRKYA NLQKKGKWKS VSKVMAERGH  180
FVSPQQCEDK FNDLNKRYKR LNEILGRGTT CEVVENNSLL EVLDHIPEKL KEEVRKILSS  240
KHLYYEEMCS YHNGNRLHLP PDPELQYSLR LALRSKDDHE TNEARKHPHN DIDNDDQDIE  300
MEEQANSLDR HASQGERRET YGIPGASMKR VKQCQGHESN AYGNSLTSLD CNKGFSSQAQ  360
IAPVDMNQVL PQGVNANLSQ KQCMEHHSMQ IERQKLQIQA QMLELEKERF EWQKTCRKRD  420
RELEMMKMEN ERMKLENEHI ALELKRKEMG ADN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017230785.10.0PREDICTED: uncharacterized protein LOC108205358
TrEMBLA0A166G6N30.0A0A166G6N3_DAUCS; Uncharacterized protein
STRINGEOY167051e-179(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA76001830
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-126sequence-specific DNA binding transcription factors