PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_000772
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C3H
Protein Properties Length: 325aa    MW: 36037.4 Da    PI: 7.6553
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_000772genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.73.2e-06111131526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                   C+ + r G+C +Gd C +aHg
  DCAR_000772 111 ACPEYKR-GECFRGDACEYAHG 131
                  7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501037.3945895IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.887106133IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-5106132IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.9E-4107133IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-4111131IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MIIGLSHLSH RSYPTVHVPP YDIVDDLTAN IHSSFSVSHY SYDVSPNALS ETDDYDIPVD  60
VSTCDHFRIY VFKVKRCARG KSHDWTECPY AHPGEKARRR DPRKFRYSGT ACPEYKRGEC  120
FRGDACEYAH GVFECWLHPT RYRTQPCKDG VLCHRKICFF AHTADQLRLL GNGDDSPSRL  180
SGSPSQLGGD SFMQKSCLYS PTSTLYALQN ESPPVSPCGS VGFNSSGSMS KMSPPSWDGL  240
GSGRQCSVLR PGFSGLSVSP TRKMTRSGLG ELDLWGEEPA MERVESGRDV RAKMYAKLSK  300
ENSLDRVDSV GSGYNMGWIS ELVQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017251287.11e-121PREDICTED: zinc finger CCCH domain-containing protein 23
SwissprotQ9M0G23e-89C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A162AZL90.0A0A162AZL9_DAUCS; Uncharacterized protein
STRINGXP_009610482.11e-110(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18572158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.12e-89C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]