PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_000772 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | C3H | ||||||||
Protein Properties | Length: 325aa MW: 36037.4 Da PI: 7.6553 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.7 | 3.2e-06 | 111 | 131 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+ + r G+C +Gd C +aHg DCAR_000772 111 ACPEYKR-GECFRGDACEYAHG 131 7******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 7.394 | 58 | 95 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.887 | 106 | 133 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.4E-5 | 106 | 132 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.9E-4 | 107 | 133 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.2E-4 | 111 | 131 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MIIGLSHLSH RSYPTVHVPP YDIVDDLTAN IHSSFSVSHY SYDVSPNALS ETDDYDIPVD 60 VSTCDHFRIY VFKVKRCARG KSHDWTECPY AHPGEKARRR DPRKFRYSGT ACPEYKRGEC 120 FRGDACEYAH GVFECWLHPT RYRTQPCKDG VLCHRKICFF AHTADQLRLL GNGDDSPSRL 180 SGSPSQLGGD SFMQKSCLYS PTSTLYALQN ESPPVSPCGS VGFNSSGSMS KMSPPSWDGL 240 GSGRQCSVLR PGFSGLSVSP TRKMTRSGLG ELDLWGEEPA MERVESGRDV RAKMYAKLSK 300 ENSLDRVDSV GSGYNMGWIS ELVQ* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017251287.1 | 1e-121 | PREDICTED: zinc finger CCCH domain-containing protein 23 | ||||
Swissprot | Q9M0G2 | 3e-89 | C3H49_ARATH; Zinc finger CCCH domain-containing protein 49 | ||||
TrEMBL | A0A162AZL9 | 0.0 | A0A162AZL9_DAUCS; Uncharacterized protein | ||||
STRING | XP_009610482.1 | 1e-110 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1857 | 21 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29190.1 | 2e-89 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_000772 |
Publications ? help Back to Top | |||
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