PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_000747
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 987aa    MW: 108788 Da    PI: 4.8392
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_000747genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.41.6e-183682148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEde+l +av+++ g++Wk+Ia+++   Rt+ qc +rwqk+l
      DCAR_000747 36 KGQWTPEEDEILRQAVQRFNGKNWKKIAECFK-ERTDVQCLHRWQKVL 82
                     799****************************9.************986 PP
2Myb_DNA-binding62.11.1e-1988134148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+W++eEd++++++v+q G++ W+tIa++++ gR +kqc++rw+++l
      DCAR_000747  88 KGPWSKEEDDIIIQLVEQIGPKKWSTIAQHLP-GRIGKQCRERWHNHL 134
                      79******************************.*************97 PP
3Myb_DNA-binding45.91.3e-14140182145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +++WT eE+  lv+a++ +G++ W+  +++++ gR+++ +k++w+
      DCAR_000747 140 KNAWTIEEEVALVRAHQVYGNK-WAELSKYLP-GRSDNAIKNHWN 182
                      689*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.9993182IPR017930Myb domain
SuperFamilySSF466891.22E-183496IPR009057Homeodomain-like
SMARTSM007173.1E-153584IPR001005SANT/Myb domain
PfamPF002495.0E-163682IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-243894IPR009057Homeodomain-like
CDDcd001675.78E-143982No hitNo description
PROSITE profilePS5129432.12783138IPR017930Myb domain
SuperFamilySSF466891.57E-3085181IPR009057Homeodomain-like
SMARTSM007177.6E-1887136IPR001005SANT/Myb domain
PfamPF002494.9E-1888134IPR001005SANT/Myb domain
CDDcd001671.97E-1590134No hitNo description
Gene3DG3DSA:1.10.10.604.8E-2795138IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-19139188IPR009057Homeodomain-like
SMARTSM007172.0E-13139187IPR001005SANT/Myb domain
PROSITE profilePS5129418.59139189IPR017930Myb domain
PfamPF002494.3E-13140183IPR001005SANT/Myb domain
CDDcd001672.60E-10142182No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 987 aa     Download sequence    Send to blast
MKGDRASNCS EGGSDSGPRV RALPGRTSGP TRRSTKGQWT PEEDEILRQA VQRFNGKNWK  60
KIAECFKERT DVQCLHRWQK VLNPELVKGP WSKEEDDIII QLVEQIGPKK WSTIAQHLPG  120
RIGKQCRERW HNHLNPSINK NAWTIEEEVA LVRAHQVYGN KWAELSKYLP GRSDNAIKNH  180
WNSSVKKKAD SYLASGLLAQ FHGLPQSMSS SSSRVQQYSG DDSIPRDVRE AEATSECSQG  240
STAVGCSQYT DDMSNATGRD DFLVTEESRQ GKELSYSPVH REVPCIMAEL PCEFGSSGNL  300
LEHIYPCDWV TSPGKNWQLD PNGLPNMSLQ CEQESLRLVH CIADDENHEG LPFPMQSSVA  360
VCTSAPLENN IAGSDKPEQM LMYQDPYPEA GNGSSSAHEN LTKCLTITNA DGFTDSLLDH  420
SSDYQTLEGN HLASNSYYSF TSEMMGTDCY QPLIPSQFPN ENGENIYEIN PNQCNATSLG  480
NQEEDLLRII NDGLIYTNDT VASNLDERVD SVGQQSQSDT EEHRAIFAPE DAFASTESNN  540
TLSIPSQSEN PAEPAEKDDA GGLFYEPPRF PSLDIPFLSC DLIGTEMQQE YSPLGIRRLM  600
MDSFTPFRMW DSPTRDDSPD AVLKSAAKSF TCTPSILKKR HRDLVSPLSE KRCEKKLERS  660
FSNLARDFSR LEVISDEIGK HEATLASPPT NLIRCSNALD ENKENLNHAS EIGEEGKGGN  720
VSCNAKTESR SAGAAQSVQQ SSKDLEEEVH DMLFISPDHF GVKSNRVPSS SAKTLGSQYT  780
RRLEAASSQV AVSESSERPL VSISSPNIPG RNKSATTSIQ RPSSAPLEIK VSSSGKFDGA  840
ENFSIFGGTP FRRSIDSPSA WKSPWFMNSF VPGPRVDTDI TIEDIGFFTS PGERSYDAIG  900
LMKQLSEHNA ATFADAQEVV ASLGRTLDGE RDTTLHKVTE SGRNSAAELL DSLFPPVKRL  960
QVAAELLESV FPPVKRLQVA GSLQLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-66361886158MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-66361886158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00466DAPTransfer from AT4G32730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017229885.10.0PREDICTED: myb-related protein 3R-1
RefseqXP_017229886.10.0PREDICTED: myb-related protein 3R-1
TrEMBLA0A166FR070.0A0A166FR07_DAUCS; Uncharacterized protein
STRINGXP_009595014.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31072448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.20.0Homeodomain-like protein