PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_000127 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | Trihelix | ||||||||
Protein Properties | Length: 230aa MW: 25491.5 Da PI: 7.6279 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 89.2 | 4.6e-28 | 23 | 118 | 1 | 85 |
trihelix 1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 rWt+qe+l+Li+++r e+r+rrg+ + +p+W++vs++++++g++r+p+qC+++w+nl++++kkike+e +r ++ ++s +++ ++l DCAR_000127 23 RWTRQEILVLIQGKRVAENRVRRGRmsgpafgsgqAVEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKEWETGReAEATESFWVMRNDL 118 8*********************986666677777588*******************************************9445555667777776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.2E-5 | 23 | 89 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.353 | 23 | 90 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 9.3E-13 | 23 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MEAAETEPPS AGDEANRVAR LPRWTRQEIL VLIQGKRVAE NRVRRGRMSG PAFGSGQAVE 60 PKWASVSSYC KRHGVNRGPV QCRKRWSNLA GDFKKIKEWE TGREAEATES FWVMRNDLRR 120 EKKLPGFFDR EVYDILDSSD DNAAAANPNP LPLPPPPAVF DSGRSAAADD GLFSDSDQQH 180 HDHDIVNPPP LALPLPSTSG KQQQHLPQQQ ASAQGPFLIF IVTSSYFSY* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017228080.1 | 1e-170 | PREDICTED: trihelix transcription factor ASR3-like | ||||
Swissprot | Q8VZ20 | 1e-77 | ASR3_ARATH; Trihelix transcription factor ASR3 | ||||
TrEMBL | A0A175Y9A6 | 1e-169 | A0A175Y9A6_DAUCS; Uncharacterized protein | ||||
STRING | evm.model.supercontig_2461.1 | 9e-84 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1786 | 24 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33550.1 | 9e-73 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_000127 |
Publications ? help Back to Top | |||
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