PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.395680.1
Common NameCsa_2G354790, LOC101221853
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 323aa    MW: 35534.4 Da    PI: 5.4817
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.395680.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.55.8e-092532851044
                     HHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHH CS
             HLH  10 rrRRdriNsafeeLrellPk.askapskKlsKaeiL 44 
                     r+RR+riN+++  L++l+P+     +++KlsK+  +
  Cucsa.395680.1 253 RKRRERINERLRILQKLVPNgT---KKRKLSKVGFV 285
                     9*******************66...*******9766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.2E-8243287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.446243295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-6248284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0056249298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.01E-7252282No hitNo description
PfamPF000101.7E-6253289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MEALGVFSDG EWESFAAMFS SEEINQTHIP MTNCCSTELH QLPNNGGGGG SSSWFYSLDA  60
FVPNLQSYCK QDIRTCSSAS VLIPNSSDFF MPIDERNFGS EFFSDVLIEE VNNALAVDAE  120
GEDSGMARFI ENNVQQSNHP PPSPLLDSAC AGNKLPIALK RKVNNGDISD NQKKKTRTTS  180
NVQRKKKTED QKKRGENVEE EGQSSISYNS DQEENSSEEA NGGGSGATSD GGVNRKSRAS  240
RGSATDPQSL YARKRRERIN ERLRILQKLV PNGTKKRKLS KVGFVFNIVQ LLSSDEMWMF  300
APLAYNGMDI GLQHNLSPFL SH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172185KKKTRTTSNVQRKK
2172186KKKTRTTSNVQRKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818230.0LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004143026.10.0PREDICTED: transcription factor bHLH85-like
TrEMBLA0A0A0LL140.0A0A0A0LL14_CUCSA; Uncharacterized protein
STRINGXP_004168430.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3140122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27740.13e-21root hair defective 6-like 4
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]