PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.395400.1
Common NameCsa_2G353500, LOC101203010
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 342aa    MW: 37365.8 Da    PI: 6.7102
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.395400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH291.9e-09215262455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +    ++   K  +L + ++Y++sLq
  Cucsa.395400.1 215 NHSLAERVRREKISERMKLLQQLVPGC----HQITGKTVVLDEIINYVQSLQ 262
                     8**************************....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.89E-16209275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.665211261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.0E-16211274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-6214262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.34E-10215266No hitNo description
SMARTSM003537.3E-9217267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MAGSTSGFQC ETMKCSFGVS SSQPLIGVDT SFSSTLGSSS TTPLCELSTA SLENEGVKTI  60
SNILHDPSTL SFDMFGTGNF SDMVGSFGFL TEADHSQIAN IKCPFSYVQI LDDEEMVSPK  120
NDAKSRPDCV SENQRKFVLG SNSSSPNKNA EDNFNVEPTE ILDKADKTQK VEHRLSANFN  180
TKPDSKKAKG GSQNVQAPKE NYIHVQARRG RAANNHSLAE RVRREKISER MKLLQQLVPG  240
CHQITGKTVV LDEIINYVQS LQQQVELLSM KLASVGLESS LEAEQILLTN NSYLSSSNVL  300
CKRGENVNDP RSRIIHTSPH VTFQLYGTTP TMPRTTSPST F*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818230.0LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004143033.10.0PREDICTED: transcription factor bHLH49
TrEMBLA0A0A0LNP90.0A0A0A0LNP9_CUCSA; Uncharacterized protein
STRINGXP_004167474.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2486333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.17e-35bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]