PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.391880.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 208aa    MW: 23961.7 Da    PI: 8.1826
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.391880.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM67.92.9e-2171322128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     p+G+ F Pt+eel+ +yL  kv g++ +   v++ +d+y+ eP+++  ++   ++k++yfF++ +kk+++  rk    + g+W+   k ++v+s+
  Cucsa.391880.1   7 PVGYVFCPTEEELLGYYLYSKVLGEQASP-LVLPVIDLYTQEPSQIWqQCRGVDNKDIYFFTTLQKKKSRIIRKVG-SNGGTWSGENKPQQVFSS 99 
                     89************************777.68**************734445577899********9876655555.478**************8 PP

             NAM  96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++ l g+ k + + k + +  e ++W+m ey+l
  Cucsa.391880.1 100 tiDNLLLGTMKRFRYEKSQVK--EDCTWIMYEYTL 132
                     777777999999999854444..69********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.11E-265154IPR003441NAC domain
PROSITE profilePS5100528.0596154IPR003441NAC domain
PfamPF023655.8E-167132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MDPSLIPVGY VFCPTEEELL GYYLYSKVLG EQASPLVLPV IDLYTQEPSQ IWQQCRGVDN  60
KDIYFFTTLQ KKKSRIIRKV GSNGGTWSGE NKPQQVFSST IDNLLLGTMK RFRYEKSQVK  120
EDCTWIMYEY TLNPFIVPEG LVHDSYVLCM IRKKIVKSEK MVMASNKRQA SNNNWPMTSM  180
HVDNQNHKRM KLQEEAVVDC IDATIGW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011660358.11e-153PREDICTED: uncharacterized protein LOC105436381
TrEMBLA0A1S3B8F13e-96A0A1S3B8F1_CUCME; NAC domain-containing protein 105-like
STRINGXP_004146370.11e-135(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55724133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.22e-16NAC domain containing protein 38