PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.388780.1

Common Name

Csa_7G378550, LOC101218718

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bHLH

Protein Properties

Length: 317aa MW: 32898.1 Da PI: 6.4033

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.388780.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.2	8.4e-10	165	209	5	54
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P+ + K + a++L + v+Y+k L Cucsa.388780.1 165 HSIAERLRRERIAERIRALQELVPSvN------KTDRAAMLDEIVDYVKFL 209 99*********************55......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.79E-15	158	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.12	160	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.9E-15	162	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.3E-7	165	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.5E-11	166	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009567	Biological Process	double fertilization forming a zygote and endosperm
GO:0031347	Biological Process	regulation of defense response
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MANNHSDTQA DDFLEQILGI PFGSSDQGLA GTDGGLAGAA AAAAAAAAAV AAQGQAPMML 60 QLSSGDGGGH ITTIGSGSVG GTGFHGGPPF PLGLSLDQGK SGFLKAEEAS GSGKRYCGEV 120 VDVRASSVKN VFQGQQMHAA MGAAPHPPAM RPRVRARRGQ ATDPHSIAER LRRERIAERI 180 RALQELVPSV NKTDRAAMLD EIVDYVKFLR LQVKVLSMSR LGGAGAVAPL VTDIPLSSVE 240 EEGSEGGRNQ PAWDKWSNDG TERQVAKLME ENVGAAMQFL QSKALCIMPI SLASAIYHTQ 300 PPDSSSVVKP ESNPPP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	169	174	RLRRER

Functional Description ? help Back to Top
Source	Description
UniProt	Required for ovule fertilization. {ECO:0000269\|PubMed:15634699}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681803	1e-168	LN681803.1 Cucumis melo genomic scaffold, anchoredscaffold00026.
GenBank	LN713255	1e-168	LN713255.1 Cucumis melo genomic chromosome, chr_1.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004146956.1	0.0	PREDICTED: transcription factor UNE12
Swissprot	O22768	1e-127	UNE12_ARATH; Transcription factor UNE12
TrEMBL	A0A0A0KAD2	0.0	A0A0A0KAD2_CUCSA; Uncharacterized protein
STRING	XP_004162188.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5449	32	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02590.3	3e-82	bHLH family protein

Link Out ? help Back to Top
Phytozome	Cucsa.388780.1
Entrez Gene	101218718

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]