PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.388630.2

Common Name

Csa_7G378380, LOC101205598

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bHLH

Protein Properties

Length: 610aa MW: 66857.8 Da PI: 5.7429

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.388630.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.8	0.00047	446	483	13	55
HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 R+ i +++ eLrel+P+ a K s + Le++++++ Lq Cucsa.388630.2 446 RQLIQDRIKELRELVPNgA------KCSIDSLLERTIKHMLFLQ 483 67799************77......7777779999999999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	8.3E-17	14	90	IPR025610	Transcription factor MYC/MYB N-terminal
CDD	cd00083	0.00364	427	483	No hit	No description
PROSITE profile	PS50888	11.211	433	482	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.1E-4	446	489	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.53E-5	446	507	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 610 aa Download sequence Send to blast
MYILLEKVIF FCRIVGQVAV TGKHQWITAD EQIPNFSSTI EYCDGWQTQF SAGIKTIVVV 60 AVVPHGVLQL GSLDKVTEDV NLVTRIRNVF LTLQESSAGE IKPMHSCKSS GYMADIPSRS 120 LATEKGEVAS VSKNVGLELS GSEAFESLTT KPDGINVENF KSQVRLLDDR MCGGEPSGCK 180 DKAVGLKQKI NVQSQNSTMD MVNICGNLLP AEKIMTNDAY FSMNPHPSSA YDGVNHNGMF 240 IRTNHTEMYL QNDMEASETI EMYPSNTSLK FPAGYELHEV LGPAFLKDAL YLDWQTEYVL 300 GGKAFELSEG MSGSQLTSDS PTERLLEAVV ADVCHSGSDV KSDTSLCKSG QSLLTTERIP 360 EPSTNVTTSA CSEGYSMGQS QTSFTGEDMQ NSLSSSGVCG VMSPKGFSST YSGTGSEHLD 420 KSSEPAKNSK RRARPGESSR PRPRDRQLIQ DRIKELRELV PNGAKCSIDS LLERTIKHML 480 FLQGITKHAD KLTKCANMKV SGLHSWHTDQ GSSWAVEVGG QLKVCSIIVE NLNKNGQILV 540 EMLCEECSHF LEIAEAIRSL GLTILKGITE AHGEKTWICF VVEGENNRNI HRMDILWSLV 600 QILQRSSTM*

Sequence ? help Back to Top

Protein Sequence Length: 610 aa Download sequence Send to blast

MYILLEKVIF FCRIVGQVAV TGKHQWITAD EQIPNFSSTI EYCDGWQTQF SAGIKTIVVV  60
AVVPHGVLQL GSLDKVTEDV NLVTRIRNVF LTLQESSAGE IKPMHSCKSS GYMADIPSRS  120
LATEKGEVAS VSKNVGLELS GSEAFESLTT KPDGINVENF KSQVRLLDDR MCGGEPSGCK  180
DKAVGLKQKI NVQSQNSTMD MVNICGNLLP AEKIMTNDAY FSMNPHPSSA YDGVNHNGMF  240
IRTNHTEMYL QNDMEASETI EMYPSNTSLK FPAGYELHEV LGPAFLKDAL YLDWQTEYVL  300
GGKAFELSEG MSGSQLTSDS PTERLLEAVV ADVCHSGSDV KSDTSLCKSG QSLLTTERIP  360
EPSTNVTTSA CSEGYSMGQS QTSFTGEDMQ NSLSSSGVCG VMSPKGFSST YSGTGSEHLD  420
KSSEPAKNSK RRARPGESSR PRPRDRQLIQ DRIKELRELV PNGAKCSIDS LLERTIKHML  480
FLQGITKHAD KLTKCANMKV SGLHSWHTDQ GSSWAVEVGG QLKVCSIIVE NLNKNGQILV  540
EMLCEECSHF LEIAEAIRSL GLTILKGITE AHGEKTWICF VVEGENNRNI HRMDILWSLV  600
QILQRSSTM*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681803	0.0	LN681803.1 Cucumis melo genomic scaffold, anchoredscaffold00026.
GenBank	LN713255	0.0	LN713255.1 Cucumis melo genomic chromosome, chr_1.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011659263.1	0.0	PREDICTED: transcription factor bHLH155 isoform X1
TrEMBL	A0A0A0K751	0.0	A0A0A0K751_CUCSA; Uncharacterized protein
STRING	XP_004161538.1	0.0	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31280.1	1e-133	conserved peptide upstream open reading frame 7

Link Out ? help Back to Top
Phytozome	Cucsa.388630.2
Entrez Gene	101205598

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]