PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.388630.1

Common Name

Csa_7G378380, LOC101205598

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bHLH

Protein Properties

Length: 692aa MW: 76190.1 Da PI: 5.8885

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.388630.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.5	0.00054	523	560	13	55
HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 R+ i +++ eLrel+P+ a K s + Le++++++ Lq Cucsa.388630.1 523 RQLIQDRIKELRELVPNgA------KCSIDSLLERTIKHMLFLQ 560 67799************77......7777779999999999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	7.7E-37	6	167	IPR025610	Transcription factor MYC/MYB N-terminal
Gene3D	G3DSA:3.30.450.40	2.0E-4	79	131	IPR029016	GAF domain-like
CDD	cd00083	0.00425	504	560	No hit	No description
PROSITE profile	PS50888	11.211	510	559	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.7E-4	523	565	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 692 aa Download sequence Send to blast
MGTTDLHQIL KSFCCNSEWK YAVFWKLKHR ARMVLTWEDG YYDNSEQHEP PEGKFFRKTL 60 ETFYDGHYSH DALGLAVAKM SYHVYSLGEG IVGQVAVTGK HQWITADEQI PNFSSTIEYC 120 DGWQTQFSAG IKTIVVVAVV PHGVLQLGSL DKVTEDVNLV TRIRNVFLTL QESSAGEIKP 180 MHSCKSSGYM ADIPSRSLAT EKGEVASVSK NVGLELSGSE AFESLTTKPD GINVENFKSQ 240 VRLLDDRMCG GEPSGCKDKA VGLKQKINVQ SQNSTMDMVN ICGNLLPAEK IMTNDAYFSM 300 NPHPSSAYDG VNHNGMFIRT NHTEMYLQND MEASETIEMY PSNTSLKFPA GYELHEVLGP 360 AFLKDALYLD WQTEYVLGGK AFELSEGMSG SQLTSDSPTE RLLEAVVADV CHSGSDVKSD 420 TSLCKSGQSL LTTERIPEPS TNVTTSACSE GYSMGQSQTS FTGEDMQNSL SSSGVCGVMS 480 PKGFSSTYSG TGSEHLDKSS EPAKNSKRRA RPGESSRPRP RDRQLIQDRI KELRELVPNG 540 AKCSIDSLLE RTIKHMLFLQ GITKHADKLT KCANMKLHQK GSGMLGTSDT DQGSSWAVEV 600 GGQLKVCSII VENLNKNGQI LVEMLCEECS HFLEIAEAIR SLGLTILKGI TEAHGEKTWI 660 CFVVEGENNR NIHRMDILWS LVQILQRSST M*

Sequence ? help Back to Top

Protein Sequence Length: 692 aa Download sequence Send to blast

MGTTDLHQIL KSFCCNSEWK YAVFWKLKHR ARMVLTWEDG YYDNSEQHEP PEGKFFRKTL  60
ETFYDGHYSH DALGLAVAKM SYHVYSLGEG IVGQVAVTGK HQWITADEQI PNFSSTIEYC  120
DGWQTQFSAG IKTIVVVAVV PHGVLQLGSL DKVTEDVNLV TRIRNVFLTL QESSAGEIKP  180
MHSCKSSGYM ADIPSRSLAT EKGEVASVSK NVGLELSGSE AFESLTTKPD GINVENFKSQ  240
VRLLDDRMCG GEPSGCKDKA VGLKQKINVQ SQNSTMDMVN ICGNLLPAEK IMTNDAYFSM  300
NPHPSSAYDG VNHNGMFIRT NHTEMYLQND MEASETIEMY PSNTSLKFPA GYELHEVLGP  360
AFLKDALYLD WQTEYVLGGK AFELSEGMSG SQLTSDSPTE RLLEAVVADV CHSGSDVKSD  420
TSLCKSGQSL LTTERIPEPS TNVTTSACSE GYSMGQSQTS FTGEDMQNSL SSSGVCGVMS  480
PKGFSSTYSG TGSEHLDKSS EPAKNSKRRA RPGESSRPRP RDRQLIQDRI KELRELVPNG  540
AKCSIDSLLE RTIKHMLFLQ GITKHADKLT KCANMKLHQK GSGMLGTSDT DQGSSWAVEV  600
GGQLKVCSII VENLNKNGQI LVEMLCEECS HFLEIAEAIR SLGLTILKGI TEAHGEKTWI  660
CFVVEGENNR NIHRMDILWS LVQILQRSST M*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681803	0.0	LN681803.1 Cucumis melo genomic scaffold, anchoredscaffold00026.
GenBank	LN713255	0.0	LN713255.1 Cucumis melo genomic chromosome, chr_1.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011659263.1	0.0	PREDICTED: transcription factor bHLH155 isoform X1
TrEMBL	A0A0A0K751	0.0	A0A0A0K751_CUCSA; Uncharacterized protein
STRING	XP_004161538.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5027	20	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31280.1	1e-172	conserved peptide upstream open reading frame 7

Link Out ? help Back to Top
Phytozome	Cucsa.388630.1
Entrez Gene	101205598

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]