PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.388540.1

Common Name

Csa_7G375830, LOC101205293

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

ERF

Protein Properties

Length: 148aa MW: 16104.3 Da PI: 4.8502

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.388540.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	66.5	5.1e-21	17	69	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 s+y+G+r+++ +g+++AeIrdps ng +r +lg+f+taeeAa+a+++a+ +++g+ Cucsa.388540.1 17 SRYRGIRRRP-WGKFAAEIRDPSRNG--ARLWLGTFDTAEEAARAYDQAAYAFRGH 69 79******.******98887..***********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	7.1E-15	17	69	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	7.19E-24	17	77	IPR016177	DNA-binding domain
CDD	cd00018	2.16E-27	17	77	No hit	No description
Gene3D	G3DSA:3.30.730.10	8.0E-32	18	78	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	25.027	18	76	IPR001471	AP2/ERF domain
SMART	SM00380	3.0E-36	18	82	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.2E-11	19	30	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.2E-11	42	58	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 148 aa Download sequence Send to blast
MEGKRTGNEG KRSTNESRYR GIRRRPWGKF AAEIRDPSRN GARLWLGTFD TAEEAARAYD 60 QAAYAFRGHL AILNFPNEYQ SGNPNFGAGY GSSAASGSSS TTTISFGGNY SGNNASRGSG 120 EVIEFEYLDN ELLEELLQSE GEGREEN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	3e-32	18	132	14	114	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681803	0.0	LN681803.1 Cucumis melo genomic scaffold, anchoredscaffold00026.
GenBank	LN713255	0.0	LN713255.1 Cucumis melo genomic chromosome, chr_1.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008451255.1	9e-98	PREDICTED: ethylene-responsive transcription factor ERF098-like
Refseq	XP_011659259.1	1e-98	PREDICTED: ethylene-responsive transcription factor ERF098-like
Swissprot	Q9LTC5	1e-43	ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBL	A0A0A0KAA6	3e-97	A0A0A0KAA6_CUCSA; Uncharacterized protein
TrEMBL	A0A1S3BR43	2e-96	A0A1S3BR43_CUCME; ethylene-responsive transcription factor ERF098-like
STRING	XP_008451255.1	4e-97	(Cucumis melo)
STRING	XP_004148977.1	5e-98	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF270	33	215

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23230.1	1e-27	ERF family protein

Link Out ? help Back to Top
Phytozome	Cucsa.388540.1
Entrez Gene	101205293

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Van den Broeck L, et al. From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress. Mol. Syst. Biol., 2017. 13(12): p. 961 [PMID:29269383]