|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Cucsa.388160.1 |
Common Name | Csa_7G373460, LOC101220863 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
Family |
LBD |
Protein Properties |
Length: 165aa MW: 18138.7 Da PI: 7.4045 |
Description |
LBD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cucsa.388160.1 | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF260 | 120.1 | 1.3e-37 | 11 | 111 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94
+C aCk+lrrkC+++C++apyf +e +++f ++hk+FGasn +kll++lp ++r +a+ ++ yeA+ar++dP+yG+v++i +lqqq+++l+a++
Cucsa.388160.1 11 PCGACKFLRRKCVNGCIFAPYFRHELgASHFSAIHKVFGASNASKLLAHLPVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQV 105
7***********************9989******************************************************************* PP
DUF260 95 allkee 100
a+l+e+
Cucsa.388160.1 106 AYLREQ 111
*99987 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 165 aa
Download sequence Send
to blast |
MAASSSSSTP PCGACKFLRR KCVNGCIFAP YFRHELGASH FSAIHKVFGA SNASKLLAHL 60 PVSHRCEAAV TISYEAQARL QDPIYGCVSH IIALQQQVMN LRAQVAYLRE QAAQILLNNY 120 TTRNPTELLY EKSPFCYSDD PFLDLQSWLL AESCSATAPE LEPAA
|
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19. {ECO:0000269|PubMed:17259263}. |
Regulation -- Description ? help
Back to Top |
Source |
Description |
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263}. |
Publications
? help Back to Top |
- Ren Y, et al.
An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] - Guo S, et al.
Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] - Li Z, et al.
RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] - Gupta A,Singh M,Laxmi A
Interaction between glucose and brassinosteroid during the regulation of lateral root development in Arabidopsis. Plant Physiol., 2015. 168(1): p. 307-20 [PMID:25810094] - Porco S, et al.
Lateral root emergence in Arabidopsis is dependent on transcription factor LBD29 regulation of auxin influx carrier LAX3. Development, 2016. 143(18): p. 3340-9 [PMID:27578783] - Lee K,Seo PJ
High-temperature promotion of callus formation requires the BIN2-ARF-LBD axis in Arabidopsis. Planta, 2017. 246(4): p. 797-802 [PMID:28766014] - Xu C,Cao H,Xu E,Zhang S,Hu Y
Genome-Wide Identification of Arabidopsis LBD29 Target Genes Reveals the Molecular Events behind Auxin-Induced Cell Reprogramming during Callus Formation. Plant Cell Physiol., 2018. 59(4): p. 744-755 [PMID:29121271] - Xu C, et al.
Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]
|