PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.387680.3

Common Name

Csa_7G360030, LOC101204984

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bHLH

Protein Properties

Length: 395aa MW: 43666.8 Da PI: 8.3382

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.387680.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.7	2.3e-09	303	350	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Cucsa.387680.3 303 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 350 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	4.09E-9	297	354	No hit	No description
SuperFamily	SSF47459	1.13E-16	297	364	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-16	299	364	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.663	299	349	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.8E-6	303	350	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.7E-10	305	355	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence Send to blast
MDNQFFLNPT GISQSLMHFD SNPSIATWHQ QFSSPMDLPT QLPDLTHCSS SSHQSPPDCF 60 LNPVSDQSFQ FDSALSSMVS SPAASNSNIT NESFAIRELI GKLGGNSERR ILELSNSTAA 120 AALPPSSSSV AEFSSDPGFA ERAARFSCFG SRSFNGRQLT NEFGNYRSHL SIGNEKLSRV 180 SSSPSLKALG SEMNLQEHKN NSSSQEDESS LSNQDKTITN PRKRKAITKA KLKEPVVEAT 240 PEKESPKKLK TVERKENVKT EEDLKKNDEN SAEERQTKAN SKPPEAPKDY IHVRARRGQA 300 TDSHSLAERV RREKISERMK LLQDLVPGCN KVTGKALMLD EIINYVQSLQ HQVEFLSMKL 360 ASVNTTRVDF NVDSLISSKQ VILSPTFLLS RTQT*

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence Send to blast

MDNQFFLNPT GISQSLMHFD SNPSIATWHQ QFSSPMDLPT QLPDLTHCSS SSHQSPPDCF  60
LNPVSDQSFQ FDSALSSMVS SPAASNSNIT NESFAIRELI GKLGGNSERR ILELSNSTAA  120
AALPPSSSSV AEFSSDPGFA ERAARFSCFG SRSFNGRQLT NEFGNYRSHL SIGNEKLSRV  180
SSSPSLKALG SEMNLQEHKN NSSSQEDESS LSNQDKTITN PRKRKAITKA KLKEPVVEAT  240
PEKESPKKLK TVERKENVKT EEDLKKNDEN SAEERQTKAN SKPPEAPKDY IHVRARRGQA  300
TDSHSLAERV RREKISERMK LLQDLVPGCN KVTGKALMLD EIINYVQSLQ HQVEFLSMKL  360
ASVNTTRVDF NVDSLISSKQ VILSPTFLLS RTQT*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds DNA to G box 5'-CACGTG-3' and to E-box 5'-CANNTG-3' (By similarity). Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000250\|UniProtKB:Q8GY61, ECO:0000269\|PubMed:24130508}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00660	PBM	Transfer from Pp3c6_9520	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681802	0.0	LN681802.1 Cucumis melo genomic scaffold, anchoredscaffold00046.
GenBank	LN713255	0.0	LN713255.1 Cucumis melo genomic chromosome, chr_1.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004150900.2	0.0	PREDICTED: transcription factor bHLH62 isoform X1
Refseq	XP_011659208.1	0.0	PREDICTED: transcription factor bHLH78 isoform X2
Swissprot	Q9FJL4	1e-89	BH078_ARATH; Transcription factor bHLH78
TrEMBL	A0A0A0K8F4	0.0	A0A0A0K8F4_CUCSA; Uncharacterized protein
STRING	XP_008458072.1	0.0	(Cucumis melo)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48560.1	6e-79	bHLH family protein

Link Out ? help Back to Top
Phytozome	Cucsa.387680.3
Entrez Gene	101204984

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]