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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.386060.2 | ||||||||
Common Name | ARF10a, Csa_6G141390, LOC101216500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ARF | ||||||||
Protein Properties | Length: 673aa MW: 74529.4 Da PI: 8.6328 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.7 | 1e-23 | 112 | 213 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+lt+sd+++ g +++p+ +ae++ ++ + t++ +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF + ++ Cucsa.386060.2 112 FAKTLTQSDANNGGGFSVPRYCAETIfprldytADPPVQ--TVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLR--SK 202 89****************************997556555..8************************************************4..47 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++ l+v+++r+ Cucsa.386060.2 203 NGDLCVGIRRA 213 8888****996 PP | |||||||
2 | Auxin_resp | 117.7 | 9.8e-39 | 281 | 364 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa a+++++FevvY+Prast+eF+vk+++v++a++++++ GmRfkm fetedss++++ +Gt+++v+ +dp+rWpnS+Wr+L+ Cucsa.386060.2 281 AAALAASGQPFEVVYYPRASTPEFCVKASSVRAAMRIQWCSGMRFKMPFETEDSSRISWfMGTISSVQVADPIRWPNSPWRLLQ 364 678899****************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 9.7E-38 | 104 | 216 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.55E-29 | 105 | 217 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.78E-21 | 111 | 212 | No hit | No description |
PROSITE profile | PS50863 | 13.07 | 112 | 214 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.7E-22 | 112 | 214 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.2E-22 | 112 | 213 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.2E-33 | 281 | 364 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 14.969 | 604 | 672 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0009743 | Biological Process | response to carbohydrate | ||||
GO:0010154 | Biological Process | fruit development | ||||
GO:0031540 | Biological Process | regulation of anthocyanin biosynthetic process | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0048441 | Biological Process | petal development | ||||
GO:0048442 | Biological Process | sepal development | ||||
GO:0048589 | Biological Process | developmental growth | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 673 aa Download sequence Send to blast |
MKEAEKILDP QLWHACAGGM VQMPAINSKV FYFPQGHAEH AQATVDFTSS LRIPPLIPCR 60 VLAVKFLADL ETDEVFANVR MVPLPNSDLN FEEEGGFGSS GSENNMEKPA SFAKTLTQSD 120 ANNGGGFSVP RYCAETIFPR LDYTADPPVQ TVIAKDVHGE VWKFRHIYRG TPRRHLLTTG 180 WSTFVNQKKL VAGDSIVFLR SKNGDLCVGI RRAKRAIGCA SDHPYGWNPG GGNCIPPYGG 240 LTMFLRDDDN KLSRKGSLSS SGSGGNLRGK GKVRPESVME AAALAASGQP FEVVYYPRAS 300 TPEFCVKASS VRAAMRIQWC SGMRFKMPFE TEDSSRISWF MGTISSVQVA DPIRWPNSPW 360 RLLQVTWDEP DLLQNVKRVS PWLVELVSNM PVIQLSPFSP PRKKFRLPQH PDFPLDSQFP 420 LSSSFSSNTL RPSSPMCCLS DNTSVGIQGA RHTQFGISLS DFHLNNKLQL GLVPSSFQQI 480 DFHSRISNRS VTDHRDSSSH NSSVLQNGEK TGPKLERSDS VKKHQFLLFG QPILTEQQIT 540 CSSSSDIRSP PTEKSSSDVN LERVKFLSHG SGSTFKQQVS PNKSPGVGFP WYQGYQATEL 600 GLDIGHCKVF MESEDVGRTL NLSVISSYEE LYRRLANMFG MEKPDILSHV LYQDATGAVK 660 QAGDKPFRYQ QI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 2e-70 | 7 | 385 | 50 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC843342 | 0.0 | KC843342.1 Cucumis sativus auxin response factor 10a (ARF10a) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001275525.1 | 0.0 | auxin response factor 18-like | ||||
Refseq | XP_011656307.1 | 0.0 | PREDICTED: auxin response factor 18-like isoform X1 | ||||
Swissprot | Q653H7 | 0.0 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | S5G1J2 | 0.0 | S5G1J2_CUCSA; Auxin response factor | ||||
STRING | XP_004172566.1 | 0.0 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | auxin response factor 16 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.386060.2 |
Entrez Gene | 101216500 |
Publications ? help Back to Top | |||
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