PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

C2H2

Protein Properties

Length: 277aa MW: 31074.9 Da PI: 8.5143

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.385670.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.1	0.00061	98	120	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H Cucsa.385670.1 98 YECKTCNRTFPSFQALGGHRASH 120 99**********99999998887 PP
2	zf-C2H2	13.9	0.00016	171	193	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H Cucsa.385670.1 171 HECSICGLEFTSGQALGGHMRRH 193 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	2.4E-13	97	122	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.81E-5	97	125	No hit	No description
PROSITE profile	PS50157	10.658	98	125	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.052	98	120	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	100	120	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	2.9E-4	163	194	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	6.91E-6	167	196	No hit	No description
Pfam	PF13912	4.2E-12	170	195	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.785	171	198	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.015	171	193	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	173	193	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
METPDEFMPS NHQIHSILSL KRRRRNKRLR LLSSPPDTTS SSSCEEEDMA NCLILLAQGD 60 SAVHRRPTAQ NFQHPLKINP KTSFNFEMAK TTSGFYVYEC KTCNRTFPSF QALGGHRASH 120 KKPKTTTMVT ALEDQPEEPQ LIKIAASPVQ IPTKTVTAGT NFQTHKGGKV HECSICGLEF 180 TSGQALGGHM RRHRATTTVS SAQQVVVATN TEEDNNTNHH HHHRHRNSVE RKERNILELD 240 LNLPAPEEDL RETKFQFTAT PQTIVFSAPT LVDCHY*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	19	26	LKRRRRNK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in stress responses. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269\|PubMed:12837949, ECO:0000269\|PubMed:16244149}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN685573	0.0	LN685573.1 Cucumis melo genomic scaffold, unassembled_sequence33065.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011657041.1	1e-157	PREDICTED: zinc finger protein ZAT5
Swissprot	Q681X4	3e-57	ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBL	A0A0A0KBJ4	1e-157	A0A0A0KBJ4_CUCSA; Uncharacterized protein
STRING	XP_008466979.1	1e-150	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF586	34	141

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	5e-54	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Cucsa.385670.1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]