PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

G2-like

Protein Properties

Length: 261aa MW: 29822.2 Da PI: 9.9651

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.384780.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.8	9e-32	55	108	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+ave+LGG+e+AtPk +l+lm+v gL+++hvkSHLQ+YR+ Cucsa.384780.1 55 PRLRWTPDLHLAFVNAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRS 108 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.297	51	111	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	7.9E-30	51	109	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.69E-14	53	109	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.0E-23	55	110	IPR006447	Myb domain, plants
Pfam	PF00249	3.2E-9	56	107	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
AKGIDEGFGE GNSNNSNTSS NNGSMEEVEK EEEFEEQRSR SGHGNVRKYS RSKMPRLRWT 60 PDLHLAFVNA VERLGGQERA TPKLVLQLMN VRGLSIAHVK SHLQMYRSKK LDESGQVLSQ 120 TMFGRNHIMQ MYHRFNHHHH GHIRGHNTSF LSHITKPYHL IKPPSNSSSR GDKMKTKPKR 180 LVDQKENLEL SLRNNSLVEN GGGKTEVVNT INNNEKLEEE EFRREINTVL SLSLSSSSSR 240 QQQEHQEEEE FRQTNISSKV *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	3e-19	56	110	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	3e-19	56	110	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-19	56	110	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-19	56	110	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-19	56	110	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-19	56	110	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	3e-19	56	110	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	3e-19	56	110	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	3e-19	56	110	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	3e-19	56	110	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	3e-19	56	110	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	3e-19	56	110	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681918	1e-117	LN681918.1 Cucumis melo genomic scaffold, anchoredscaffold00020.
GenBank	LN713265	1e-117	LN713265.1 Cucumis melo genomic chromosome, chr_11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011657091.1	1e-123	PREDICTED: probable transcription factor KAN4 isoform X2
TrEMBL	A0A0A0KBB2	5e-87	A0A0A0KBB2_CUCSA; Uncharacterized protein
STRING	XP_004162479.1	8e-88	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3012	32	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	3e-37	G2-like family protein

Link Out ? help Back to Top
Phytozome	Cucsa.384780.1
Entrez Gene	101205384

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]