PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.383850.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 320aa    MW: 36308.3 Da    PI: 9.487
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.383850.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.35.4e-08154201254
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     +  h  +Er RR++ ++++  L ++lP +     +K++K +i++ A + I+++
  Cucsa.383850.1 154 CHRHMLNERMRREKQKQCYLALHSMLPRN-----TKNDKNSIVQSAARTIQEM 201
                     567899*********************98.....9***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.72E-11149218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.79E-7150206No hitNo description
PROSITE profilePS5088811.458152201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-5154201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-7156220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-5158207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
SFQSHNYSQF NFPLYSFLLL SSLPHQTFQN LNNLITPPHL MDDTFPVEFW HNDHFWLDAP  60
ISVPVSAPTS PPPAKQISAF LPYDLSPPPT GLLGQDNNIA TTTAATVIAS ASASASTSYD  120
SRNVNKRMIE YWRKHWHEKK ELPVSAGDLE REKCHRHMLN ERMRREKQKQ CYLALHSMLP  180
RNTKNDKNSI VQSAARTIQE MKGLEKTLKR RNSELEMEIA IAMKKKEKKE GIINVALANT  240
SCGINSMLTV LNVLKTVGVN SNAIHATFFN SQFSAQLAID THMRVAEVER ALQLTLNEAE  300
RKFQRQHSEG SKEIKESYF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818431e-138LN681843.1 Cucumis melo genomic scaffold, anchoredscaffold00105.
GenBankLN7132591e-138LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011649165.10.0PREDICTED: transcription factor bHLH92, partial
TrEMBLA0A0A0LIK30.0A0A0A0LIK3_CUCSA; Uncharacterized protein
STRINGXP_008465193.11e-160(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125722734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.11e-36bHLH family protein