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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.381330.1 | ||||||||
Common Name | Csa_2G315390, LOC101216118 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ARF | ||||||||
Protein Properties | Length: 551aa MW: 60285.4 Da PI: 6.6758 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 71.3 | 1.2e-22 | 107 | 208 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f kvlt+sd+++ g +++p+ +a+++ + + +tl ++d +g +W++++iyr++++r++lt+GW++Fv+ ++L +gD v+F ++s Cucsa.381330.1 107 FAKVLTSSDANNGGGFSVPRFCADSIfpplnyqV-E-PPVQTLAITDVHGVVWNFRHIYRGTPRRHLLTTGWSKFVNNKKLIAGDAVIFA--RDS 197 89*********************999****9743.3.33359************************************************..557 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++ +v+++r+ Cucsa.381330.1 198 SRDIFVGIRRS 208 88889***997 PP | |||||||
2 | Auxin_resp | 88 | 1.8e-29 | 261 | 344 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a++ ++FevvY+Pr +tseFv+++ekv+++l+ ++ +G R+km +eteds ++++ +Gtv++ s + W++S+Wr+L+ Cucsa.381330.1 261 AAELAAEFKPFEVVYYPRIGTSEFVIPAEKVNNSLNYQWYPGIRVKMPVETEDSLKTQWyQGTVTSASVPIQGPWKGSPWRMLE 344 67889999***************************************************9*********999**********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 6.28E-29 | 102 | 216 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.1E-33 | 104 | 218 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.4E-20 | 107 | 208 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.51E-19 | 107 | 207 | No hit | No description |
SMART | SM01019 | 4.3E-20 | 107 | 209 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.689 | 107 | 209 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 4.8E-26 | 261 | 343 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0010208 | Biological Process | pollen wall assembly | ||||
GO:0048830 | Biological Process | adventitious root development | ||||
GO:0052543 | Biological Process | callose deposition in cell wall | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 551 aa Download sequence Send to blast |
MMDPNLWRAF SGNSAHIHTV GSEVYYFVQG HLEQATYVPT LSRSVLSNPI TKCIVSAADY 60 TADPLSDEVC LKLNLNPIPP GQSVSQVVHP FSSCDDGNGQ RNRIEKFAKV LTSSDANNGG 120 GFSVPRFCAD SIFPPLNYQV EPPVQTLAIT DVHGVVWNFR HIYRGTPRRH LLTTGWSKFV 180 NNKKLIAGDA VIFARDSSRD IFVGIRRSSK SSGGGDCSKW NSQVGGGGRC NVEEKRSGDR 240 STDVFTRTNI GKVPAETVAT AAELAAEFKP FEVVYYPRIG TSEFVIPAEK VNNSLNYQWY 300 PGIRVKMPVE TEDSLKTQWY QGTVTSASVP IQGPWKGSPW RMLEVTWEET DALQSAKFVS 360 PWEVELASPS PPIPPPLHSA KKYRIPQKSG MVNAEADLFS PMMRFGDSTM GQFNRSLMNF 420 NSFPAGMQGA RQIFFRESGS SNPHNEISPP TSDENSMLKL NTAPNTQTVS TDLHIGSVQS 480 DTLSPDSQAS VLSFATGTAE NQSCNSTKAG VNSFQLFGQI IYTSPPAENE LDNGADSDDG 540 DKKRKRSIDL * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 7e-61 | 1 | 365 | 50 | 388 | Auxin response factor 5 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 541 | 546 | KKRKRS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681823 | 0.0 | LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014. | |||
GenBank | LN713257 | 0.0 | LN713257.1 Cucumis melo genomic chromosome, chr_3. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004150940.1 | 0.0 | PREDICTED: auxin response factor 17 | ||||
TrEMBL | A0A0A0LJV3 | 0.0 | A0A0A0LJV3_CUCSA; Auxin response factor | ||||
STRING | XP_004169060.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4030 | 30 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77850.1 | 1e-129 | auxin response factor 17 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.381330.1 |
Entrez Gene | 101216118 |
Publications ? help Back to Top | |||
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